Jatropha Genome Database

JcCB0433251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.20 - phase: 0 
         (122 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...   209   4e-55

>IMGA|Medtr3g100750.1 AAA ATPase, central region
           chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
           EGN_Mt090430 20090702
          Length = 355

 Score =  209 bits (531), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 107/112 (95%)

Query: 1   MQSTHMASEQITEEAVYLCTGNPLPRDIEQISYWLLNESFAETLKRISEIKTKKGLALVD 60
           +QSTHMAS+QITEEAVYLCTGNPLP+DIEQISYWLLNE ++E+ KRI ++KT+KGLAL+D
Sbjct: 234 LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALID 293

Query: 61  IVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCNDKLQLGSLISSFTR 112
           IVREVTMFVFKI MPS VRVQL+ND+ADIEYRLSFGCNDKLQLGS+++SFTR
Sbjct: 294 IVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTR 345