Jatropha Genome Database

JcCB0433251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0433251.10 + phase: 0 /partial
         (50 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g101080.1 C2 chr03_pseudomolecule_IMGAG_V3 24419575-2...    48   9e-07
IMGA|Medtr4g140500.1 C2 chr04_pseudomolecule_IMGAG_V3 34478222-3...    47   3e-06

>IMGA|Medtr3g101080.1 C2 chr03_pseudomolecule_IMGAG_V3
            24419575-24429500 E EGN_Mt090430 20090702
          Length = 2152

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNR 47
            S+ GKVTIQI++VV  G  +G ++L  ES K G SR LEIE  W+N+
Sbjct: 2107 SSFGKVTIQIERVVMLGTVSGEYTLLPES-KSGPSRNLEIEFQWSNK 2152


>IMGA|Medtr4g140500.1 C2 chr04_pseudomolecule_IMGAG_V3
            34478222-34468816 E EGN_Mt090430 20090702
          Length = 2186

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 1    STLGKVTIQIDKVVTEGVYNGLFSLNHESNKDGSSRTLEIEISWTNRTSE 50
            S  GKVTIQID+VV  G   G ++L   ++K G  R LEIE  W+N+ S+
Sbjct: 2130 SKFGKVTIQIDRVVMLGAVAGEYTL-LPASKSGPPRNLEIEFQWSNKVSD 2178