Jatropha Genome Database

JcCB0432051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0432051.10 - phase: 0 /partial
         (170 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC234842_3.1 WD40 repeat AC234842.1 17142-14392 E EGN_Mt090...    50   4e-07

>IMGA|AC234842_3.1 WD40 repeat AC234842.1 17142-14392 E EGN_Mt090430
           20090702
          Length = 482

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 1/43 (2%)

Query: 127 KLMQAQLEESGRLRRAIASRVEKPETVGGFEVLVKHRHSVTAV 169
           K+++ Q EESGR+R+AIASRV K +  GGFE LVKH+  VTAV
Sbjct: 114 KMIKEQQEESGRIRKAIASRV-KLDGDGGFENLVKHKQCVTAV 155