Jatropha Genome Database

JcCB0431461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0431461.10 - phase: 2 /pseudo/partial
         (125 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g006270.1 Heat shock protein Hsp70 chr05_pseudomolecu...    74   2e-14
IMGA|Medtr5g097180.1 Heat shock protein Hsp70 chr05_pseudomolecu...    59   4e-10
IMGA|Medtr8g121830.1 Heat shock protein Hsp70; Short-chain dehyd...    50   3e-07

>IMGA|Medtr5g006270.1 Heat shock protein Hsp70
           chr05_pseudomolecule_IMGAG_V3 632225-635160 E
           EGN_Mt090430 20090702
          Length = 558

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 92  FNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVR 125
           FNMKRLIGRVDTDPVVHASK+LPFLVQTLDIGVR
Sbjct: 93  FNMKRLIGRVDTDPVVHASKNLPFLVQTLDIGVR 126


>IMGA|Medtr5g097180.1 Heat shock protein Hsp70
           chr05_pseudomolecule_IMGAG_V3 38736725-38737343 H
           EGN_Mt090430 20090702
          Length = 180

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 32/35 (91%), Gaps = 1/35 (2%)

Query: 92  FNMKRLIGRVDTDP-VVHASKSLPFLVQTLDIGVR 125
           FN+K LIGRVDTDP VV ASK+LPFLVQT+DIGVR
Sbjct: 92  FNVKHLIGRVDTDPIVVRASKNLPFLVQTMDIGVR 126


>IMGA|Medtr8g121830.1 Heat shock protein Hsp70; Short-chain
           dehydrogenase/reductase SDR
           chr08_pseudomolecule_IMGAG_V3 28341550-28343806 H
           EGN_Mt090430 20090702
          Length = 692

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 88  ELQFFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIG 123
           E   +NM+RLIGR+D DP+V  +K  PFL+ TL IG
Sbjct: 206 EATIYNMRRLIGRIDVDPIVQENKKFPFLLHTLYIG 241