Jatropha Genome Database

JcCB0430531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430531.10 - phase: 0 /pseudo/partial
         (155 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding chr07_pseudomo...   101   2e-22

>IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding
           chr07_pseudomolecule_IMGAG_V3 3853072-3859438 E
           EGN_Mt090430 20090702
          Length = 366

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 11/119 (9%)

Query: 37  VKVDGKSTDQKANTPRSKHSATEQRRRSKINDSLLEVKEXXXXXXXXXXEYNYSVISECW 96
           VKVD     ++AN  RSKHS TEQRRRSKIN+    +++          + ++       
Sbjct: 37  VKVDEPIRGKRANPHRSKHSETEQRRRSKINERFQALRDLIPENDSKRDKASF------- 89

Query: 97  RHLHILQVIEYIQFLQEKVQKYEGSYQGWNHEPAKLVPWRNGNRPTESYADQSQGINGG 155
               +L+VIEYI FLQEK+Q YE  Y+GWN EP KL+PWRN + P+E+  D S+ I  G
Sbjct: 90  ----LLEVIEYIHFLQEKLQIYEHPYEGWNQEPTKLIPWRNHHGPSENTTDPSRAIQNG 144