Jatropha Genome Database

JcCB0430181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0430181.10 - phase: 0 /partial
         (317 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g010530.1 hypothetical protein chr02_pseudomolecule_I...   290   6e-79

>IMGA|Medtr2g010530.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 2589632-2585978 E
           EGN_Mt090430 20090702
          Length = 708

 Score =  290 bits (742), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 156/253 (61%), Positives = 189/253 (74%), Gaps = 12/253 (4%)

Query: 21  FYEKIEAPKFVDLNAPDPYHHGDDCYWFCMRVGCDQKHEEEMDSETIYKNFLLRVMAARS 80
           FYEKIEAPKFVDL  PD     DD +WFC R GCDQKHEEE DSE IYKNF+LRVMAARS
Sbjct: 21  FYEKIEAPKFVDLTKPDKRRPDDDRHWFCARFGCDQKHEEEFDSEAIYKNFVLRVMAARS 80

Query: 81  PNIRLRKALHK--KDSSTDLKCPRTVPAKPSKPRVSRLALISSISKRIVDPKVK-VKPLS 137
           PN+RLRKAL++  +++S++LKCP T PA   KPR+SR+  ISS+S ++ + KVK VKPLS
Sbjct: 81  PNVRLRKALNRREREASSNLKCPNTAPA---KPRMSRMDFISSLSHKVTENKVKVVKPLS 137

Query: 138 KQNATPNAKAKQQPSIIAKALTTPRAKKQLSNPEAFRSVRNPK--TTATAMPKNRVVAKT 195
           K  ATP AK KQ PS ++KALTTPR +K++SN E FRSV+N K  T A + PK+RVVAK 
Sbjct: 138 KVAATPKAKVKQSPS-VSKALTTPRNQKKVSNLEQFRSVQNKKSLTVAVSKPKSRVVAKA 196

Query: 196 LVFDSPKKSVRTKSSLELNTPVKTLCAGMKKLEITSAKKQVLGYDRPLPCDTAASRK-KL 254
           LVF+SPKK V TKSS+EL T +K LC+ MKKLE    KK   G +  LP    +SRK + 
Sbjct: 197 LVFNSPKKVVGTKSSVELKTSMKALCSAMKKLEFNGVKKNGEGCNNSLPV--GSSRKVQF 254

Query: 255 RGREVKSRLFDGL 267
           +GREVKSR+FD L
Sbjct: 255 KGREVKSRVFDSL 267