Jatropha Genome Database

JcCB0429441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0429441.10 + phase: 0 
         (73 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g100710.1 AAA ATPase, central region chr03_pseudomole...   134   1e-32
IMGA|Medtr3g100750.1 AAA ATPase, central region chr03_pseudomole...    73   3e-14
IMGA|Medtr5g020710.1 hypothetical protein chr05_pseudomolecule_I...    50   3e-07

>IMGA|Medtr3g100710.1 AAA ATPase, central region
          chr03_pseudomolecule_IMGAG_V3 24169522-24164910 E
          EGN_Mt090430 20090702
          Length = 339

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 59/68 (86%), Positives = 65/68 (95%)

Query: 1  MAPVLPNSQPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSAL 60
          MAP++ ++QPWVEKYRPKQVKDVAHQEEVVRVLTNT+ETG CPHMLFYGPPGTGKTT+AL
Sbjct: 1  MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60

Query: 61 AIARQLFG 68
          AIA QLFG
Sbjct: 61 AIAHQLFG 68


>IMGA|Medtr3g100750.1 AAA ATPase, central region
          chr03_pseudomolecule_IMGAG_V3 24245152-24251862 F
          EGN_Mt090430 20090702
          Length = 355

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query: 11 WVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
          WVEKYRP+ + DVA   ++V  +         PH+L YGPPGTGKT++ LA+AR+L+G
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG 91


>IMGA|Medtr5g020710.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 7831697-7834680 H
           EGN_Mt090430 20090702
          Length = 686

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 9   QPWVEKYRPKQVKDVAHQEEVVRVLTNTIETGDCPHMLFYGPPGTGKTTSALAIARQLFG 68
           Q W +K++P  +      ++  ++L   +  G CPH+L  GP G+GK   A+A  R+++G
Sbjct: 412 QLWADKHKPASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLREIYG 471