Jatropha Genome Database

JcCB0428571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428571.10 + phase: 0 /partial
         (164 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g125360.1 RNA-binding region RNP-1 (RNA recognition m...    63   7e-11

>IMGA|Medtr8g125360.1 RNA-binding region RNP-1 (RNA recognition
           motif); RNA dependent RNA polymerase
           chr08_pseudomolecule_IMGAG_V3 29220511-29225570 E
           EGN_Mt090430 20090702
          Length = 1123

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 4   TIHVYGFPPDVTVDEVKKCLESHSGDGTVFAMKI-RETKNGGQRKYAIVQFQT--ARDAE 60
           T+ V   P   T +++ + LE+  G  +VFA++I  +  N   R    VQF+T  A+   
Sbjct: 10  TVRVTNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKA 69

Query: 61  LIISLNKRLRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWTGTN 120
           L ++ NK+L   + +L     + DI+P P    + +++  L+ G  I  +  SVL +   
Sbjct: 70  LTLAENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEG 129

Query: 121 VSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHC 159
           V        ++L F+++H    +KL++ +EN+ + + +C
Sbjct: 130 VRGWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYC 168