Jatropha Genome Database

JcCB0428411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0428411.10 + phase: 0 /partial
         (355 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g005800.1 Glycerol kinase chr04_pseudomolecule_IMGAG_...   545   e-156

>IMGA|Medtr4g005800.1 Glycerol kinase chr04_pseudomolecule_IMGAG_V3
           457045-453054 E EGN_Mt090430 20090702
          Length = 519

 Score =  545 bits (1405), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/323 (80%), Positives = 289/323 (89%), Gaps = 3/323 (0%)

Query: 32  RKLEKELPGGRTHFVETSGLPISTYFSAMKILWLMENVDAVKLATKTGDALFGTVDTWLI 91
           R+LEKEL GGRTHFVE+ GLPISTYFSAMK+LWLMENVDAVK A K  DALFGT+DTWLI
Sbjct: 119 RRLEKELSGGRTHFVESCGLPISTYFSAMKLLWLMENVDAVKEAIKKKDALFGTIDTWLI 178

Query: 92  WNLTGGVSGGLHVTDVSNASRTMLMNIKTLDWDKTTLQTLGIPAGILPKIVSNSEIIGNV 151
           WNLTGGV GGLHVTD SNASRTMLMN+KTL+WD++TL+ L IPA ILPKI+SNSEIIGNV
Sbjct: 179 WNLTGGVKGGLHVTDASNASRTMLMNLKTLNWDESTLKALQIPAEILPKIISNSEIIGNV 238

Query: 152 GKGWPVLGVPIAGCLGDQHAAMVGQGCRKGEAKSTYGTGAFILLNTGEKIVKSNHGLLTT 211
             GWPV G+PIAGCLGDQHAAM+GQ CRKGEAKSTYGTGAFILLNTGE +VKSNHGLL+T
Sbjct: 239 SSGWPVAGIPIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEGVVKSNHGLLST 298

Query: 212 LAFKLGPKAPTNYALEGSIAIAGAAVQWLRDGLGIINVASESEVLAKQVDSSGGVYFVPA 271
           +A+KLGP APTNYALEGS+AIAGAAVQWLRDGLG+I  A + E LA +V+S+GGVYFVPA
Sbjct: 299 IAYKLGPNAPTNYALEGSVAIAGAAVQWLRDGLGLITTAKDIEALALEVESNGGVYFVPA 358

Query: 272 FNGLFAPHWRDDARGVCVGITRFTTKAHIARAVLESMCFQVKDVLDSMQKDTGEKGEQNN 331
           FNGLFAP WRDDARGVC+GITR+T+KAHIARAVLES+CFQVKDV+DSM KD+   G   +
Sbjct: 359 FNGLFAPWWRDDARGVCIGITRYTSKAHIARAVLESICFQVKDVIDSMHKDS---GADQS 415

Query: 332 AKGEFLLRVDGGATVNNLLMQIQ 354
            K EFLLRVDGGATVNNLLMQ Q
Sbjct: 416 KKDEFLLRVDGGATVNNLLMQTQ 438