Jatropha Genome Database

JcCB0426111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0426111.10 - phase: 0 /partial
         (118 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g144850.1 Glycoside hydrolase, family 77 chr03_pseudo...   192   5e-50

>IMGA|Medtr3g144850.1 Glycoside hydrolase, family 77
           chr03_pseudomolecule_IMGAG_V3 37673305-37667776 E
           EGN_Mt090430 20090702
          Length = 573

 Score =  192 bits (487), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 100/117 (85%)

Query: 2   GPGKSLFDAISGAFGNIRIIAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGSDADNPHLP 61
           GPG S FDAIS A G I I AEDLGVITEDVVQLRKSIGAPGMAVLQFGFG  ADNPHLP
Sbjct: 396 GPGTSFFDAISRAVGRINITAEDLGVITEDVVQLRKSIGAPGMAVLQFGFGGGADNPHLP 455

Query: 62  HNHEANQVVYTGTHDNDTTRGWWDNLKKREKSNVLKYLSITEEDDMPWALIQAAVAS 118
           HNHE NQVVYTGTHDNDT +GWW+ L ++EKS+VL Y+S+T EDD+ WALIQ A+AS
Sbjct: 456 HNHECNQVVYTGTHDNDTIQGWWEALNQKEKSHVLSYVSLTGEDDISWALIQTALAS 512