Jatropha Genome Database

JcCB0425521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0425521.10 + phase: 0 /partial
         (418 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g073690.1 Homeodomain-like, identical chr01_pseudomol...   370   e-103
IMGA|Medtr2g117610.1 Homeodomain-like, related chr02_pseudomolec...   185   4e-47
IMGA|Medtr1g125320.1 Homeodomain-like, related chr01_pseudomolec...   177   6e-45

>IMGA|Medtr1g073690.1 Homeodomain-like, identical
           chr01_pseudomolecule_IMGAG_V3 14753080-14751391 E
           EGN_Mt090430 20090702
          Length = 495

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/392 (53%), Positives = 245/392 (62%), Gaps = 23/392 (5%)

Query: 13  SDEDE-HFIGDDVTS-DGKRKMSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEVNDPTGKK 70
           SDEDE +F  ++ +  D KRK+SPWQRMKWTD+MVRLLIMAV+YIGDEAGSE  DP  KK
Sbjct: 94  SDEDEPNFPAEESSGGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPN-KK 152

Query: 71  KAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVEN 130
           K+ GL QKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTAC+VVEN
Sbjct: 153 KSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVEN 212

Query: 131 QSLLETMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGSSGVASGTTNHSPEVATDQ 190
           Q LL++MDLSPKMK+EV+KLLNSKHLFFREMCAYHNSCGHG  GVA+    H  E  +  
Sbjct: 213 QGLLDSMDLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGHG--GVATSNVQHQVEGGSGT 270

Query: 191 S--------HAQHPHASHVQQQRCSHSSENAQLATNSRSETEGSKMGRRVSNXXXXXXXX 242
           +                   QQ C HSSEN  + +   S  EG +M +  S         
Sbjct: 271 TTPPQNQPQQQHQHQHQQQNQQHCFHSSENG-VGSLGVSRGEGLRMLKIGSGYVEEEDDE 329

Query: 243 XXXXXXXXXXXXXXXXAIEGNSRGQNXXXXXXXXXXXXXXKPSRKRQRTGIF-----AXX 297
                           + EG S+G                KPSRKR R G F     +  
Sbjct: 330 DEEDESEDFSDEGEDESGEGCSKGH----INDQDEEENDGKPSRKRARKGGFSFPRSSSS 385

Query: 298 XXXXXXXXXXXXXXIQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKF 357
                          QDG KS WEKK W++ R+M+LEEQ++ Y+ QA +LEKQRLKW ++
Sbjct: 386 TQLVNQMNNEISGVFQDGGKSTWEKKQWIRNRIMQLEEQKIGYESQAFQLEKQRLKWARY 445

Query: 358 SSKKEREMERAKXXXXXXXXXXXXMVLLVRQK 389
           SSKKEREMERAK            MVLL+R+K
Sbjct: 446 SSKKEREMERAKLENERRRLENERMVLLIRKK 477


>IMGA|Medtr2g117610.1 Homeodomain-like, related
           chr02_pseudomolecule_IMGAG_V3 27677141-27675468 E
           EGN_Mt090430 20090702
          Length = 445

 Score =  185 bits (469), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 125/161 (77%), Gaps = 9/161 (5%)

Query: 13  SDEDEHFIGDDVTSD-----GK-RKMSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEVNDP 66
           S++DEH  G+D   +     GK +K SPWQRMKWTD++V LLI  V  +G++    ++  
Sbjct: 82  SEDDEHGYGEDGNCENFFDGGKGKKGSPWQRMKWTDNVVGLLIAVVSCVGEDG--TISGV 139

Query: 67  TGKKKAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACK 126
            G K+  G+ QKKGKWK+VS+ M+ KG +VSPQQCEDKFNDLNKRYKR+N+ILG+GT C+
Sbjct: 140 DGVKRKSGVVQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQ 199

Query: 127 VVENQSLLETM-DLSPKMKEEVKKLLNSKHLFFREMCAYHN 166
           VVEN +L+++M +LS K K++V+K+L+SKHLF++EMCAYHN
Sbjct: 200 VVENPALMDSMVNLSAKAKDDVRKILSSKHLFYKEMCAYHN 240



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 51/78 (65%)

Query: 312 IQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXX 371
            QD  KSPWEK+ W+K +L++L+EQ V +Q +A EL+KQ+ KW+++ SKK+RE+E+    
Sbjct: 333 FQDPVKSPWEKREWIKQQLLQLQEQNVDFQAKAFELQKQQFKWLRYRSKKDRELEKLAME 392

Query: 372 XXXXXXXXXXMVLLVRQK 389
                      +L ++Q+
Sbjct: 393 NKRMKFENEHRILKLKQR 410


>IMGA|Medtr1g125320.1 Homeodomain-like, related
           chr01_pseudomolecule_IMGAG_V3 27623789-27622379 E
           EGN_Mt090430 20090702
          Length = 450

 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 120/157 (76%), Gaps = 3/157 (1%)

Query: 12  PSDEDEHFIGDDVTSDGKR-KMSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEVNDPTGKK 70
           PS  ++ F G      GK+   SPWQR+KWTD+MVRL+I AV YIG++  S+    +G++
Sbjct: 97  PSFMEDGFDGQHEGGRGKKGSSSPWQRVKWTDNMVRLMITAVSYIGEDRTSDGVGGSGRR 156

Query: 71  KAGGLSQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVEN 130
           K   L QKKGKW+ VS+ M E+G +VSPQQCEDKFNDLNKRYK++ND+LG+GT+C+VVEN
Sbjct: 157 KFAVL-QKKGKWRCVSKVMAERGCHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVEN 215

Query: 131 QSLLETM-DLSPKMKEEVKKLLNSKHLFFREMCAYHN 166
            +LL+ +  LS K K+EV+K+L+SK LF+ EMC+YHN
Sbjct: 216 PALLDGIYYLSEKEKDEVRKILSSKQLFYEEMCSYHN 252



 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query: 312 IQDGAKSPWEKKHWMKVRLMELEEQQVSYQRQALELEKQRLKWVKFSSKKEREMERAKXX 371
           I +  ++ W +K W+  R ++LEEQ++  Q + LELEKQR KW +FS +K+RE+E+    
Sbjct: 366 IPENMRAAWLQKQWVDSRQVQLEEQKLQIQAEKLELEKQRFKWQRFSKQKDRELEKLSLE 425

Query: 372 XXXXXXXXXXMVLLVRQK 389
                     M L ++QK
Sbjct: 426 NERMKLENERMALELKQK 443