Jatropha Genome Database

JcCB0424661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424661.10 + phase: 2 /pseudo/partial
         (338 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g121190.1 hypothetical protein chr04_pseudomolecule_I...   242   2e-64
IMGA|Medtr3g113590.1 Major intrinsic protein chr03_pseudomolecul...   132   3e-31

>IMGA|Medtr4g121190.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 28314666-28329549 E
           EGN_Mt090430 20090702
          Length = 722

 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 157/207 (75%), Gaps = 14/207 (6%)

Query: 146 EGPSEISFKVVVGGLAQKFSGSMPVKESLRVPAKLEKKGRRSFLFSIEKDVNQQDSGAKE 205
           E  +EI+ KVV+GGL QK S ++  ++ LRVPAKLE K RRSF F++E +VNQ D   K 
Sbjct: 430 EEQNEIAVKVVIGGLVQKLSSNLSPRDLLRVPAKLEIKERRSFSFTVENEVNQLDGPDKG 489

Query: 206 AASADRKAKFQGQRSVDNIMLDLAKFIGKEKIPLKVLKDVGDLINFTLSQAQNRQPLSGS 265
            +S+D+  KFQG+R VDN++ DLAKFIGK+K+P KVLK+VG+LI+ TLSQAQN QPLSGS
Sbjct: 490 KSSSDKSIKFQGRRRVDNVISDLAKFIGKDKVPAKVLKEVGELISLTLSQAQNHQPLSGS 549

Query: 266 TTFHRIEISASPDPLN--------------GLYIGAHGLYSSEVIQLQRKFGQWQDERGT 311
           T F+RIEI  S DPLN              GLYIGA+G+YSSEVIQ++R++GQWQ++   
Sbjct: 550 TIFNRIEIPTSFDPLNVYCKPSNKYSHFQPGLYIGAYGVYSSEVIQMRRRYGQWQEDGRA 609

Query: 312 NQPSNVEFYEYVEAVKLTGDPYIAAGQ 338
            + S++EFYEYVEA+K+TGDPY+ AGQ
Sbjct: 610 KETSDLEFYEYVEALKITGDPYVPAGQ 636



 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 17  PLKAPGATSRLNPPGPTEGKSDLFVVXXXXXXXXXXXXXXXXLAEGLPGFQNILRDMIPG 76
           PL A G +S +     T+ +S+LFVV                 AEG+PGFQN+L+DMIPG
Sbjct: 274 PLDASGRSSSMES---TDDRSELFVVSTEDPESGDDRNDGSDPAEGMPGFQNVLKDMIPG 330

Query: 77  MKLKVLKVTTPAKVDKDFISKVI 99
           +K+K+ KV TP KVDKD +SKVI
Sbjct: 331 VKVKIFKVITPEKVDKDLMSKVI 353


>IMGA|Medtr3g113590.1 Major intrinsic protein
           chr03_pseudomolecule_IMGAG_V3 28558988-28564861 E
           EGN_Mt090430 20090702
          Length = 630

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 142/286 (49%), Gaps = 30/286 (10%)

Query: 61  EGLPGFQNILRDMIPGMKLKVLKVTTP--AKVDKDFISKVIXXXXXXXXXXXXXXXXXXX 118
           +G+    N L++ IPG+K+KV+ +     A+   D I +++                   
Sbjct: 278 DGIKSVINFLKEKIPGLKVKVMNINVEEEAREGNDSIKQIMEEDGNKTD----------- 326

Query: 119 GDDELGSESDQXXXXXXXXXXXXXXXSEGPSEISFKVVVGGLAQKFSGSMPVKESLRVPA 178
           G+D+   E D+               S+   ++  K+ +GG+      +    E +R+PA
Sbjct: 327 GEDDNLDEPDEVTLESDGDA------SDEEKDLDMKLFIGGIVHNNEDNSSKDEFIRLPA 380

Query: 179 KLEKKGRRSFLFSIEKDVNQQDSGAKEAASADRKAKFQGQRSVDNIM-LDLAK-FIGKEK 236
           +++   R SFL  I +     D+  KE    + K      + +  +M  D+AK F G +K
Sbjct: 381 EIKNMERESFLLHIPR--RNLDNDRKEDKVRNIKVAALAAQGISELMPSDVAKAFWGSDK 438

Query: 237 IPLKVLKDVGDLINFTLSQAQNRQPLSGSTTFHRIEISASP----DPLNGLYIGAHGLYS 292
           +  KV K + +++   +SQAQ +  LS  T F RI   A P    DP +GLY+GA G Y 
Sbjct: 439 VSSKVSKSMREIVKLAISQAQKKSRLSEDTYFSRI---ACPRGDFDPFDGLYVGAFGPYG 495

Query: 293 SEVIQLQRKFGQWQDERGTNQPSNVEFYEYVEAVKLTGDPYIAAGQ 338
            E++QL+RKFG W D    N  S++EF+EYVEAVKLTGD  + AGQ
Sbjct: 496 IEIVQLRRKFGHWNDVDSENNTSDIEFFEYVEAVKLTGDLNVPAGQ 541