Jatropha Genome Database

JcCB0424221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424221.20 - phase: 2 /partial
         (95 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g102990.1 Myb, DNA-binding; Response regulator receiv...    65   8e-12

>IMGA|Medtr3g102990.1 Myb, DNA-binding; Response regulator receiver;
           Response regulator, RegA/PrrA/ActR type;
           Homeodomain-related chr03_pseudomolecule_IMGAG_V3
           25254714-25258529 E EGN_Mt090430 20090702
          Length = 570

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 6/79 (7%)

Query: 4   MKSQSFNLSCVSDFESSQKSINWGMHPSTT-LDDDFQVCWFQGDCYAMNLGLHNIELPEY 62
           +K+Q+ NLSC+SD ES Q+++  G   ++  LD+D    W     + MN G  NI + EY
Sbjct: 487 LKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFYW-----HNMNFGQQNIGMSEY 541

Query: 63  CDPGLITEVPTHLHDAVRF 81
            DPGL+ EVP HL+D+  +
Sbjct: 542 YDPGLLIEVPNHLYDSADY 560