Jatropha Genome Database

JcCB0424111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0424111.10 + phase: 2 /partial
         (103 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g038620.1 DNA-directed RNA polymerase, subunit C11/M/...   176   2e-45

>IMGA|Medtr2g038620.1 DNA-directed RNA polymerase, subunit C11/M/9
           chr02_pseudomolecule_IMGAG_V3 10822895-10820021 F
           EGN_Mt090430 20090702
          Length = 114

 Score =  176 bits (447), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 92/104 (88%), Gaps = 1/104 (0%)

Query: 1   NNILYPKEDKKQRILLYACRNCDHQEVADNNRVYRNEVQHSVTEFTQILQDVASDPTLPR 60
           NNILYPKED++Q+ILLYACRNCDHQE ADN  VYRNE+ HSV E TQ+LQDVA+DPTLPR
Sbjct: 11  NNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPR 70

Query: 61  TKSVRCSACGHGEAVFLQATSR-EEGFTLFYVCCNPNCGNRWRD 103
           TK+VRC  C HGEAVF QAT+R EEG TLF+VCCNPNCG+RWRD
Sbjct: 71  TKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114