Jatropha Genome Database

JcCB0423721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0423721.10 + phase: 0 /partial
         (162 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g110810.1 hypothetical protein chr07_pseudomolecule_I...   120   3e-28

>IMGA|Medtr7g110810.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 25862843-25869117 E
           EGN_Mt090430 20090702
          Length = 442

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 77/131 (58%)

Query: 8   ISGMQYYTDSHAEGITENKDAGVETXXXXXXXXXXXXXXXXXXKFESIMSEYGMQISRIL 67
           +SG+QYY D+HA G  +NKD+G+ET                  +FES MSE GM+ISRIL
Sbjct: 185 LSGIQYYLDNHASGSADNKDSGLETTKFFLNCLCLLLGRLDSKRFESTMSEIGMKISRIL 244

Query: 68  LSQLHCADEDXXXXXXCILKKSIFKPNYSSGKDLTDSRQMDVXXXXXXXXXDENDGIARA 127
           + QL+C DED       I K  I KPN+S    L ++RQ ++         DE DG +RA
Sbjct: 245 VPQLNCTDEDVVVGVVSIFKAIILKPNHSQEDSLVNNRQANIVIPFLLHLLDEQDGTSRA 304

Query: 128 VVMLIAEYCSM 138
           VVMLIAEYCS+
Sbjct: 305 VVMLIAEYCSI 315