Jatropha Genome Database

JcCB0420241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0420241.10 - phase: 0 /TE/pseudo/partial
         (160 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc...    74   3e-14
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc...    67   5e-12
IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H...    65   1e-11
IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H...    64   3e-11
IMGA|Medtr1g117590.1 Polynucleotidyl transferase, Ribonuclease H...    62   1e-10
IMGA|Medtr7g105970.1 Polynucleotidyl transferase, Ribonuclease H...    61   2e-10
IMGA|Medtr8g074720.1 Polynucleotidyl transferase, Ribonuclease H...    57   3e-09
IMGA|Medtr5g079690.1 Polynucleotidyl transferase, Ribonuclease H...    57   5e-09
IMGA|Medtr8g037100.1 hypothetical protein chr08_pseudomolecule_I...    56   7e-09
IMGA|Medtr3g127630.1 Polynucleotidyl transferase, Ribonuclease H...    53   7e-08
IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H...    53   7e-08
IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H...    49   1e-06
IMGA|Medtr2g008910.1 hypothetical protein chr02_pseudomolecule_I...    49   1e-06
IMGA|Medtr1g046450.1 hypothetical protein chr01_pseudomolecule_I...    47   3e-06

>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
            transcriptase); Hemopexin; Polynucleotidyl transferase,
            Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
            27457173-27452820 H EGN_Mt090430 20090702
          Length = 1147

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%)

Query: 39   KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
            KCN+DATI  T+   S   ++R+  G+F+ A T      + P  ++A GL + L W+ T 
Sbjct: 921  KCNIDATISTTDQTISMGAILRDSEGRFVGAMTNVLKASMSPAESEAWGLHQGLKWITTL 980

Query: 99   PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
               RV+ E DC  L   V +     S++  +++  + LL    + E+V+ RRQ N  AHA
Sbjct: 981  GHQRVIFESDCKMLVDDVHSNNVNHSEYGLIVKNCRSLLQIFNNHEVVFTRRQANGSAHA 1040

Query: 159  LA 160
            LA
Sbjct: 1041 LA 1042


>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Polynucleotidyl transferase,
           Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3
           15868030-15871357 E EGN_Mt090430 20090702
          Length = 845

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DA+   +  +      +R++ G F++A T  FA +    + +A+GL   L WL  +
Sbjct: 687 KCNIDASFSTSLNKVGLGMCLRDDDGAFVLARTEWFAPICDIDVGEAVGLHTALDWLSNQ 746

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLL-SQIPSSELVWVRRQGNKPAH 157
               V   +DC ++   V +     S++  ++   KQLL  +  +S + + RRQ N+ AH
Sbjct: 747 QFDNVDFVLDCKKVVDCVNSSLEDSSEFGCIITTCKQLLVDRFQNSHVEFSRRQANRVAH 806

Query: 158 ALA 160
            LA
Sbjct: 807 ELA 809


>IMGA|Medtr2g088060.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr02_pseudomolecule_IMGAG_V3 19822787-19820648 H
           EGN_Mt090430 20090702
          Length = 612

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DA+   +  R      +R++ G F++A T  FA +      +A+GL   L WL  +
Sbjct: 458 KCNIDASFSTSLNRVGLGMCLRDDDGAFVLARTKWFAHICDIDAGEAVGLHTTLDWLSNQ 517

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLL-SQIPSSELVWVRRQGNKPAH 157
               V   +DC ++   V +     S++  ++   KQLL  +  +S + + RRQ N+ AH
Sbjct: 518 QFDNVDFVLDCKKVVDCVNSSLEDSSEFGCIITACKQLLVDRFQNSHVEFSRRQANRVAH 577

Query: 158 ALA 160
            LA
Sbjct: 578 ELA 580


>IMGA|Medtr5g068610.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr05_pseudomolecule_IMGAG_V3 24592281-24593243 H
           EGN_Mt090430 20090702
          Length = 320

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNVDA I            +R+  GQ + A T  + G   P  A+A+GLR+ + WL   
Sbjct: 171 KCNVDAAIFNELKSLCTCICIRDHRGQIIKAATNWYEGNPLPQEAEAVGLRDAILWLGEL 230

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            +  V +E+DC  +  ++    N  +++  ++     LL Q  + ++ +VRRQ N   H 
Sbjct: 231 GLSDVHIELDCKIVVDSICDKNNNQAEFGNIIANCMSLLQQFTNFKISFVRRQANVVTHN 290

Query: 159 LA 160
           LA
Sbjct: 291 LA 292


>IMGA|Medtr1g117590.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr01_pseudomolecule_IMGAG_V3 25276151-25276918 H
           EGN_Mt090430 20090702
          Length = 235

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 9/127 (7%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DA+             +R+E   F++A    F+ + + HI +A+GL   L W+   
Sbjct: 85  KCNIDASFSEVSNMVRIGMCIRDENDTFVLAKQVRFSPICEVHIGEALGLLAALDWMHNL 144

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNP----XSDWTPVLEEIKQLLSQIP-SSELVWVRRQGN 153
            +G V  E+D  R    V  GFN      +++  ++E  K L S    +S + +VRRQ N
Sbjct: 145 SLGPVDFELDAKR----VVDGFNSLNCDVTEFGNIIEHCKSLCSNFYVNSRVEFVRRQAN 200

Query: 154 KPAHALA 160
           + AH LA
Sbjct: 201 EVAHNLA 207


>IMGA|Medtr7g105970.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr07_pseudomolecule_IMGAG_V3 24393992-24396620 H
           EGN_Mt090430 20090702
          Length = 287

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNV+  +        Y    R+  G FL   + +    + P  A+A GL E +   + R
Sbjct: 138 KCNVECALFNNNSIMGYGLCFRDSMGHFLPGMSNYEFLRVTPSEAEATGLLEAVKLAIAR 197

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLSQIPSSELVWVRRQGNKPAHA 158
            +  V+ + DC  +  AV +  NP ++   ++   KQLLS   +  + +VRRQ NK AH 
Sbjct: 198 GMQSVIFKSDCKIVVDAVNSSVNPHNELGDIIFYCKQLLSLHANFSVRFVRRQANKVAHN 257

Query: 159 LA 160
           +A
Sbjct: 258 IA 259


>IMGA|Medtr8g074720.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr08_pseudomolecule_IMGAG_V3 14929440-14928565 H
           EGN_Mt090430 20090702
          Length = 241

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 1/123 (0%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNVDA+      R  +   +R+E G F+ A T     V    + +A+GL   + W+   
Sbjct: 91  KCNVDASFSDDLNRVGFGFCIRDEGGNFIRAKTMWSNPVCSIDVGEAMGLSHAIQWVHEL 150

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLS-QIPSSELVWVRRQGNKPAH 157
            +  V  E+D  ++      G N  +++  ++EE ++  +    +S++ + RRQ N+ AH
Sbjct: 151 LLTNVDFELDAKKVVDYFNRGNNDITEFGAIVEECRRSCNLYFENSKVEFSRRQANEVAH 210

Query: 158 ALA 160
            LA
Sbjct: 211 TLA 213


>IMGA|Medtr5g079690.1 Polynucleotidyl transferase, Ribonuclease H
           fold, putative chr05_pseudomolecule_IMGAG_V3
           29745277-29749144 E EGN_Mt090430 20090702
          Length = 153

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 59  VRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTRPIGRVLVEIDCLRLFQAVTT 118
           +R++ G F++A T  FA +    + +A+GL   L WL  +    V   +DC ++   V +
Sbjct: 3   LRDDDGAFVLARTEWFAPICDIDVGEAVGLHTALDWLSNQKFDNVDFVLDCKKVVDCVNS 62

Query: 119 GFNPXSDWTPVLEEIKQLL-SQIPSSELVWVRRQGNKPAHALA 160
                S++  ++   KQLL     +S + + RRQ N+ AH LA
Sbjct: 63  SLEDSSEFGCIITACKQLLVDSFQNSHVEFSRRQANRVAHELA 105


>IMGA|Medtr8g037100.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 7957038-7958530 H
           EGN_Mt090430 20090702
          Length = 410

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 59  VRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTRPIGRVLVEIDCLRLFQAVTT 118
           +R+E G F++A T  F+ + + H+ +A+GL   + W+    +G V  E+D  R+  +  +
Sbjct: 280 IRDENGHFVLARTDCFSPMCEVHVGEALGLLSAMDWVHLLQLGTVDFEMDAKRVVDSTNS 339

Query: 119 GFNPXSDWTPVLEEIKQLLSQIPSSELV-WVRRQGNKPAH 157
                +++  ++   K L SQ   +  V +VRRQ N+ AH
Sbjct: 340 SHTDATEYGNIISNCKTLFSQFYGNSCVEFVRRQANEVAH 379


>IMGA|Medtr3g127630.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 32416044-32415535 H
           EGN_Mt090430 20090702
          Length = 169

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DA+   +         +R++ G F++A T  F+ +    + +A+GL   L W+   
Sbjct: 19  KCNIDASFSDSLNMIGIGICIRDDQGDFVMAKTDCFSPLCDVDVGEAVGLHTTLQWVADL 78

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLS-QIPSSELVWVRRQGNKPAH 157
               V   +DC  + +   +     S+   +++  ++L      +S   + RRQ N  AH
Sbjct: 79  HYDNVDFVLDCKSVVEHFNSNLGDSSELGCIIQACRKLFDCNFQNSHAEFNRRQANGVAH 138

Query: 158 ALA 160
            LA
Sbjct: 139 ELA 141


>IMGA|Medtr4g033120.1 Polynucleotidyl transferase, Ribonuclease H
           fold, related chr04_pseudomolecule_IMGAG_V3
           8119740-8120808 H EGN_Mt090430 20090702
          Length = 303

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNVD +         +   +RNE G  + A T     V    + +A+GL   + W+   
Sbjct: 153 KCNVDVSFSEALNCVGFGFCIRNEFGNLIKAKTMWSNPVFASDVGEALGLSNAIRWVHEL 212

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLS-QIPSSELVWVRRQGNKPAH 157
            +  +  E+D  ++      G N  S++  ++EE ++  +    +S++ + RRQ N+ AH
Sbjct: 213 QLLNINFELDAKKVVDYFNNGSNDISEFGSIVEECRRSHNFYFANSKVEFSRRQANEVAH 272

Query: 158 ALA 160
            LA
Sbjct: 273 TLA 275


>IMGA|Medtr3g124260.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 31444078-31442691 H
           EGN_Mt090430 20090702
          Length = 404

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCNV A+   +  +      +R+E G F+ A T     +    I +A+GL   + W+   
Sbjct: 254 KCNVVASFSSSTNKVGVGMCIRDEDGCFVRAKTMWHTPLCSVDIGEALGLHHTIRWVHEL 313

Query: 99  PIGRVLVEIDCLRLFQAVTTGFNPXSDWTPVLEEIKQLLS-QIPSSELVWVRRQGNKPAH 157
            +  V  E+D  R+      G    + +  +++  +   S  +P+S + + RRQ N  AH
Sbjct: 314 QLQNVNFEVDSKRVADYFNRGNGDITKFEVIMDSNRHYCSLYLPNSHVEFYRRQANGVAH 373

Query: 158 ALA 160
            LA
Sbjct: 374 ELA 376


>IMGA|Medtr2g008910.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 1846448-1847105 H
           EGN_Mt090430 20090702
          Length = 184

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%)

Query: 39  KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWLLTR 98
           KCN+DAT +  +     +  V N+ G F+ A T    G      A+A GL E L WL   
Sbjct: 82  KCNIDATCYYEDNFFCISVCVHNDKGNFVAAFTKELKGKSDVQEAEAAGLLETLKWLQDL 141

Query: 99  PIGRVLVEIDCLRLFQAV 116
            +  V +E  CL++ Q++
Sbjct: 142 HLTPVQIETCCLQMVQSL 159


>IMGA|Medtr1g046450.1 hypothetical protein
          chr01_pseudomolecule_IMGAG_V3 10816119-10817879 E
          EGN_Mt090430 20090702
          Length = 73

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 39 KCNVDATIHMTEGRSSYAGLVRNEAGQFLVACTGHFAGVLKPHIAKAIGLREVLSWL 95
          KCN+D TI   +GR      +R + G F+   T  F G+ +   A+A GL+E +SWL
Sbjct: 13 KCNIDKTIFQEQGRYGIRMCIRGDKGDFVAPKTYWFKGLPRSWEAEARGLKETISWL 69