Jatropha Genome Database

JcCB0417211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0417211.10 - phase: 0 /pseudo/partial/short
         (34 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g104130.1 localized according to blastn similarity to...    53   3e-08
IMGA|Medtr4g147160.1 localized according to blastn similarity to...    53   4e-08
IMGA|Medtr3g104120.1 localized according to blastn similarity to...    47   3e-06

>IMGA|Medtr3g104130.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          putative chr03_pseudomolecule_IMGAG_V3
          25790204-25790617 E EGN_Mt090430 20090702
          Length = 69

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 28/29 (96%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          MADWGPV++AVVLFVLL+PGLLFQ+PG+ 
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQMPGRN 29


>IMGA|Medtr4g147160.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          putative chr04_pseudomolecule_IMGAG_V3
          36848613-36848822 H EGN_Mt090430 20090702
          Length = 69

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M+DWGPV V++VLFVLLTPGLLFQIPG+ 
Sbjct: 1  MSDWGPVFVSIVLFVLLTPGLLFQIPGRS 29


>IMGA|Medtr3g104120.1 localized according to blastn similarity to
          EST sequences; therefore, the coding span corresponds
          only to an area of similarity since the initation codon
          and stop codon could not be precisely determined,
          related chr03_pseudomolecule_IMGAG_V3 25788369-25788578
          H EGN_Mt090430 20090702
          Length = 69

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 25/29 (86%)

Query: 1  MADWGPVIVAVVLFVLLTPGLLFQIPGKG 29
          M +WG ++V V+LFVLLTPGLLFQ+PG+ 
Sbjct: 1  MFNWGSIVVTVMLFVLLTPGLLFQVPGRS 29