Jatropha Genome Database

JcCB0415641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0415641.10 - phase: 1 /partial
         (144 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC235671_7.2 Peptidoglycan-binding LysM AC235671.2 31615-27...    87   2e-18
IMGA|AC235671_7.1 Peptidoglycan-binding LysM AC235671.2 31615-27...    87   2e-18

>IMGA|AC235671_7.2 Peptidoglycan-binding LysM AC235671.2 31615-27432
           E EGN_Mt090430 20090702
          Length = 333

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDA-ANNWTLQCEPSGFRPAAKSTWSTC 59
           CNSS+ + S+D+PLLVPN TYF+TA+ CVKC CD+  +N  LQCE S  +P   + WS C
Sbjct: 228 CNSSIKSDSLDFPLLVPNATYFYTAHECVKCKCDSTGDNKNLQCEASNLKPI--NNWSVC 285

Query: 60  PSMRCDXXXXXXXXXXXXXXXXXXXXXYAGF-SSQNILTTLATVSTC 105
           PS++C                      Y G+ SS+NI TTLAT +TC
Sbjct: 286 PSLKC-SGSVLLGNTTSTDSCSRRVCDYTGYTSSRNISTTLATQNTC 331


>IMGA|AC235671_7.1 Peptidoglycan-binding LysM AC235671.2 31615-27432
           E EGN_Mt090430 20090702
          Length = 372

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 5/107 (4%)

Query: 1   CNSSVSTTSIDYPLLVPNGTYFFTANSCVKCNCDA-ANNWTLQCEPSGFRPAAKSTWSTC 59
           CNSS+ + S+D+PLLVPN TYF+TA+ CVKC CD+  +N  LQCE S  +P   + WS C
Sbjct: 228 CNSSIKSDSLDFPLLVPNATYFYTAHECVKCKCDSTGDNKNLQCEASNLKPI--NNWSVC 285

Query: 60  PSMRCDXXXXXXXXXXXXXXXXXXXXXYAGF-SSQNILTTLATVSTC 105
           PS++C                      Y G+ SS+NI TTLAT +TC
Sbjct: 286 PSLKC-SGSVLLGNTTSTDSCSRRVCDYTGYTSSRNISTTLATQNTC 331