Jatropha Genome Database

JcCB0402451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.20 - phase: 0 /partial/short
         (49 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding chr05_pseudomo...    82   6e-17
IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical chr...    73   4e-14
IMGA|Medtr7g065170.1 hypothetical protein chr07_pseudomolecule_I...    47   2e-06

>IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding
          chr05_pseudomolecule_IMGAG_V3 17108849-17107589 F
          EGN_Mt090430 20090702
          Length = 93

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 47/50 (94%), Gaps = 2/50 (4%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLATTD--TAQAAIIRNLLM 48
          VSA KVLQETCNYI+NLHREVDDLS+RLS+LLA+TD  +AQAAIIR+LLM
Sbjct: 44 VSATKVLQETCNYIKNLHREVDDLSDRLSQLLASTDSNSAQAAIIRSLLM 93


>IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical
          chr07_pseudomolecule_IMGAG_V3 1726600-1726149 H
          EGN_Mt090430 20090702
          Length = 68

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 45/51 (88%), Gaps = 2/51 (3%)

Query: 1  VSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--TDTAQAAIIRNLLMQ 49
          V A+KVLQETCNYIRNL REVDDLS RLS+LLAT  +D+A+A+IIR+LL Q
Sbjct: 18 VPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 68


>IMGA|Medtr7g065170.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 13340550-13340293 H
          EGN_Mt090430 20090702
          Length = 85

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 30/35 (85%)

Query: 2  SAAKVLQETCNYIRNLHREVDDLSERLSELLATTD 36
          SA+K+LQET N+IR L +EV+DLSERL++L+ + D
Sbjct: 36 SASKILQETLNHIRRLQKEVEDLSERLTQLMDSVD 70