Jatropha Genome Database

JcCB0402451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0402451.10 - phase: 1 /TE
         (447 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g040700.1 hypothetical protein chr07_pseudomolecule_I...    69   3e-12
IMGA|Medtr5g048410.1 hypothetical protein chr05_pseudomolecule_I...    66   4e-11

>IMGA|Medtr7g040700.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 10057424-10057978 H
           EGN_Mt090430 20090702
          Length = 184

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%)

Query: 288 RRIGEVTFFDSDLPPEGRNHCKPLYIQIAVNGRDTRNVMVDNGSALCVCPLKMLSKFKIE 347
           RR+GE            ++H K L+IQ  V+      V+VD G  + + P   L K    
Sbjct: 53  RRVGEQKAMFEKPNSSMKSHLKLLFIQAKVDDIGFNKVLVDRGVGVNLMPQSFLKKIGKF 112

Query: 348 ESELEPSNIVVKAYDNTMRNAKGTFKAKISTGAVESWVDVVVLDSLANYSLLLGRPWLHP 407
           +++L P NI +  Y+   R++ G  +  ++   V       V+ S AN++LLLG+ W+H 
Sbjct: 113 DTDLNPHNIALLNYEGKARHSLGALQVNLTVVTVTMPTLFKVVPSKANFNLLLGKEWIHG 172

Query: 408 LGAVLSTLHRKV 419
           +G   S++H+++
Sbjct: 173 IGGFPSSMHQRI 184


>IMGA|Medtr5g048410.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 20435366-20437381 H
           EGN_Mt090430 20090702
          Length = 468

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 307 HCKPLYIQIAVNGRDTRNVMVDNGSALCVCPLKMLSKFKIEESELEPSNIVVKAYDNTMR 366
           H KPL+IQ  V+      V VD  + + +    +L +    +++L+  NIV+  Y+    
Sbjct: 339 HLKPLFIQAKVDDVRVNKVFVDGSATVNLMSQSLLKRIGKCDADLKHHNIVLSNYEGKTG 398

Query: 367 NAKGTFKAKISTGAVESWVDVVVLDSLANYSLLLGRPWLHPLGAVLSTLHRKVKIPWGTD 426
            + G  +  ++ G V      +V+ S AN++LLLGR  +H +G + S++H+KV I W  D
Sbjct: 399 FSLGALQVSLTVGFVTRPTLFIVVPSKANFNLLLGRECIHGIGVIPSSMHQKV-IIWRDD 457

Query: 427 VVTVNAQEDLS 437
               + + D S
Sbjct: 458 GSVEDVEADQS 468