Jatropha Genome Database
- JcCB0402071.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0402071.10 - phase: 0 /partial
(321 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g086860.1 Glutamate decarboxylase; chr03_pseudomolecu... 621 e-178
IMGA|Medtr5g084950.1 Glutamate decarboxylase; chr05_pseudomolecu... 610 e-175
IMGA|Medtr5g083650.1 Pyridoxal-dependent decarboxylase; Thioredo... 75 6e-14
IMGA|Medtr7g022250.1 Pyridoxal-dependent decarboxylase; chr07_ps... 70 2e-12
IMGA|Medtr5g083620.1 Glutamate decarboxylase chr05_pseudomolecul... 64 1e-10
>IMGA|Medtr3g086860.1 Glutamate decarboxylase;
chr03_pseudomolecule_IMGAG_V3 20503200-20508077 F
EGN_Mt090430 20090702
Length = 508
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 294/321 (91%), Positives = 306/321 (95%)
Query: 1 MALSKTALDTDVSVHSTFASRYVRASLPRFKMPVNSIPKEAAYQIINDELMLDGNPRLNL 60
M LSKTA ++DVSVHSTFASRYVR SLPRFKMP SIPK+AAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPEESIPKDAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAVG 120
ASFVTTWMEPECDKLIMAS+NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPL E EAAVG
Sbjct: 61 ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEENEAAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRKWQN+RK +GKP D PNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKQEGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLKPDYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETP 240
VKL YYV+DP KAVE+VDENTICVAAILGSTLNGEFEDVK+LNDLL+EKNKETGW+TP
Sbjct: 181 VKLSEGYYVMDPAKAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEEL 300
IHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSGHKYGLVYAGIGW IWRSKEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRSKEDLPEEL 300
Query: 301 IFHINYLGADQPTFTLNFSKG 321
IFHINYLGADQPTFTLNFSKG
Sbjct: 301 IFHINYLGADQPTFTLNFSKG 321
>IMGA|Medtr5g084950.1 Glutamate decarboxylase;
chr05_pseudomolecule_IMGAG_V3 32390561-32395009 E
EGN_Mt090430 20090702
Length = 351
Score = 610 bits (1573), Expect = e-175, Method: Compositional matrix adjust.
Identities = 290/321 (90%), Positives = 303/321 (94%)
Query: 1 MALSKTALDTDVSVHSTFASRYVRASLPRFKMPVNSIPKEAAYQIINDELMLDGNPRLNL 60
M LS+TA D SVHSTFASRYVR SLPRFKM NSIPKEAAYQIINDELMLDGNPRLNL
Sbjct: 1 MVLSETATHMDASVHSTFASRYVRTSLPRFKMGENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAVG 120
ASFVTTWMEPECDKLIMAS+NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPL ++E AVG
Sbjct: 61 ASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDSEPAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRKWQNRRK++GK +NPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNRRKSEGKSCENPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLKPDYYVLDPEKAVEMVDENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETP 240
VKL+ YYV+DPEKA EMVDENTICVAAILGSTLNGEFEDVK+LNDLL+EKN ETGW+TP
Sbjct: 181 VKLRDGYYVMDPEKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNAETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEEL 300
IHVDAASGGFIAPFLYPEL WDFRL LVKSINVSGHKYGLVYAGIGW+IWRSKEDLPEEL
Sbjct: 241 IHVDAASGGFIAPFLYPELVWDFRLSLVKSINVSGHKYGLVYAGIGWIIWRSKEDLPEEL 300
Query: 301 IFHINYLGADQPTFTLNFSKG 321
IFHINYLGADQPTFTLNFSKG
Sbjct: 301 IFHINYLGADQPTFTLNFSKG 321
>IMGA|Medtr5g083650.1 Pyridoxal-dependent decarboxylase; Thioredoxin
domain 2 chr05_pseudomolecule_IMGAG_V3 31752615-31753412
H EGN_Mt090430 20090702
Length = 111
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 35/43 (81%)
Query: 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKE 294
+ F Y LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW S+
Sbjct: 15 SSFPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWCSRR 57
>IMGA|Medtr7g022250.1 Pyridoxal-dependent decarboxylase;
chr07_pseudomolecule_IMGAG_V3 5518776-5527735 E
EGN_Mt090430 20090702
Length = 541
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGEAEAAV-GVGTVGSSEAIMLAGLAFKR 139
+ N + +D + + V M A L + + + G T G +E+I+LA + R
Sbjct: 157 HTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLA-VKSSR 215
Query: 140 KWQNRRKAQGKPIDNPNIVTGANVQVCWEKFARYFEVELKEVKLKPDYYVLDPEKAVEMV 199
+ +K I P ++ + ++K A+YF ++L V + ++ D + +
Sbjct: 216 DYMKSKKG----ITKPEMIIPESGHSAYDKAAQYFNIKLWRVPVDKNFQA-DVKATRRYI 270
Query: 200 DENTICVAAILGSTLNGEFEDVKQLNDLLMEKNKETGWETPIHVDAASGGFIAPFL---- 255
++NTI + +G + +K+L L + ++ HVD GGF+ PF
Sbjct: 271 NKNTIMLVGSSPGFPHGIIDPIKELGQL------ASNFDICFHVDLCLGGFVLPFARELG 324
Query: 256 YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKE 294
YP +DF + V SI+V HKYGL G V++R+ +
Sbjct: 325 YPIQPYDFTVKGVTSISVDVHKYGLAPKGTSIVLYRNHD 363
>IMGA|Medtr5g083620.1 Glutamate decarboxylase
chr05_pseudomolecule_IMGAG_V3 31746151-31746542 H
EGN_Mt090430 20090702
Length = 74
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 34/46 (73%)
Query: 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDL 296
I F Y L+ DFRL LVKSINVSGHK LVY+GIGW+IW S+ +
Sbjct: 27 ILSFPYKMLQRDFRLSLVKSINVSGHKNDLVYSGIGWIIWCSRRGI 72