Jatropha Genome Database

JcCB0400871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0400871.10 - phase: 0 /partial
         (84 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g038090.1 PAS chr02_pseudomolecule_IMGAG_V3 10614355-...    46   5e-06

>IMGA|Medtr2g038090.1 PAS chr02_pseudomolecule_IMGAG_V3
          10614355-10611625 E EGN_Mt090430 20090702
          Length = 480

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 4  QPAEELLRKIQELEAGQAHLEQEMSKLKLTSDPKS 38
          +P  ELL+KI+ LEAGQ HL+QEMSKLKL+   +S
Sbjct: 5  EPEAELLKKIERLEAGQVHLKQEMSKLKLSQRRRS 39