Jatropha Genome Database

JcCB0399861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399861.10 - phase: 1 /partial
         (113 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g083960.1 Protein of unknown function DUF1350 chr08_p...   109   3e-25

>IMGA|Medtr8g083960.1 Protein of unknown function DUF1350
           chr08_pseudomolecule_IMGAG_V3 17177151-17181694 E
           EGN_Mt090430 20090702
          Length = 444

 Score =  109 bits (273), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/69 (72%), Positives = 57/69 (82%), Gaps = 1/69 (1%)

Query: 46  IERLLTETVRQSQDAW-GGSKDWIEVEGAWVLKPRISRPKSVVHFVGGIFVGAAPQLTYR 104
           IERL+T +  QSQDAW G S DW +VEG+W+LKP+ S+P  VVHFVGGIFVGAAPQLTYR
Sbjct: 79  IERLVTTSASQSQDAWWGSSSDWTQVEGSWILKPKSSKPNFVVHFVGGIFVGAAPQLTYR 138

Query: 105 LFLERLVEK 113
            FLERL EK
Sbjct: 139 WFLERLSEK 147