Jatropha Genome Database

JcCB0399111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0399111.10 + phase: 0 
         (91 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding chr05_pseudomo...   115   5e-27
IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical chr...    84   2e-17
IMGA|Medtr7g065170.1 hypothetical protein chr07_pseudomolecule_I...    50   3e-07

>IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding
          chr05_pseudomolecule_IMGAG_V3 17108849-17107589 F
          EGN_Mt090430 20090702
          Length = 93

 Score =  115 bits (288), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 69/77 (89%)

Query: 15 ISDEQIIELISKLRQLLPEIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLT 74
          I+D QI +LISKL+QL+PE+   RS+KVSA+KVLQETCNYI+NLHREVDDLS+RLSQLL 
Sbjct: 17 ITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLA 76

Query: 75 TIDADSPEAAIIRSLIM 91
          + D++S +AAIIRSL+M
Sbjct: 77 STDSNSAQAAIIRSLLM 93


>IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical
          chr07_pseudomolecule_IMGAG_V3 1726600-1726149 H
          EGN_Mt090430 20090702
          Length = 68

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 47/58 (81%)

Query: 33 EIRDRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLTTIDADSPEAAIIRSLI 90
          EI      KV ASKVLQETCNYIRNL REVDDLS RLSQLL TID+DS EA+IIRSL+
Sbjct: 9  EILRETCSKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 66


>IMGA|Medtr7g065170.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 13340550-13340293 H
          EGN_Mt090430 20090702
          Length = 85

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 31/35 (88%)

Query: 43 SASKVLQETCNYIRNLHREVDDLSERLSQLLTTID 77
          SASK+LQET N+IR L +EV+DLSERL+QL+ ++D
Sbjct: 36 SASKILQETLNHIRRLQKEVEDLSERLTQLMDSVD 70