Jatropha Genome Database

JcCB0398871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0398871.10 + phase: 2 /partial
         (53 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g009990.1 Phosphoglucose isomerase (PGI) chr06_pseudo...    82   5e-17

>IMGA|Medtr6g009990.1 Phosphoglucose isomerase (PGI)
           chr06_pseudomolecule_IMGAG_V3 1856654-1847350 E
           EGN_Mt090430 20090702
          Length = 568

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/44 (81%), Positives = 39/44 (88%)

Query: 10  AVCSAVGVLPLSLQYGFSIVEKFLKGASSIDQHFSSAPFEKNVP 53
           +VCSAVGV PLSLQYGFS+VEKFLKGASSIDQH  S PFE N+P
Sbjct: 276 SVCSAVGVFPLSLQYGFSVVEKFLKGASSIDQHMHSEPFESNIP 319