Jatropha Genome Database
- JcCB0398461.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0398461.20 + phase: 0 /partial
(76 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g024280.1 Cyclin-like F-box; F-box protein interactio... 53 4e-08
IMGA|Medtr3g040820.1 Cyclin-like F-box; F-box protein interactio... 51 1e-07
IMGA|Medtr4g024270.1 Cyclin-like F-box; F-box protein interactio... 49 6e-07
IMGA|Medtr5g082830.1 Cyclin-like F-box chr05_pseudomolecule_IMGA... 49 6e-07
IMGA|Medtr5g082790.1 Cyclin-like F-box chr05_pseudomolecule_IMGA... 49 6e-07
IMGA|Medtr3g024910.1 Cyclin-like F-box chr03_pseudomolecule_IMGA... 49 7e-07
IMGA|Medtr4g024320.1 Cyclin-like F-box; F-box protein interactio... 48 1e-06
IMGA|Medtr1g031760.1 Cyclin-like F-box chr01_pseudomolecule_IMGA... 47 2e-06
IMGA|Medtr4g092970.1 Cyclin-like F-box; F-box protein interactio... 47 2e-06
IMGA|Medtr8g029600.1 Cyclin-like F-box chr08_pseudomolecule_IMGA... 47 3e-06
IMGA|Medtr4g024600.1 Cyclin-like F-box chr04_pseudomolecule_IMGA... 47 3e-06
IMGA|Medtr7g047610.1 Cyclin-like F-box chr07_pseudomolecule_IMGA... 45 8e-06
IMGA|Medtr2g129450.1 Cyclin-like F-box; F-box protein interactio... 45 1e-05
>IMGA|Medtr4g024280.1 Cyclin-like F-box; F-box protein interaction
domain chr04_pseudomolecule_IMGAG_V3 5522803-5521643 E
EGN_Mt090430 20090702
Length = 386
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 21 QEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
++ T+ LP E+ + IL RLP+ SLIH K VC W SL DP A HF
Sbjct: 8 KKQKTLPYLPHELIIQILMRLPVKSLIHFKCVCKLWFSLISDPHFANSHF 57
>IMGA|Medtr3g040820.1 Cyclin-like F-box; F-box protein interaction
domain chr03_pseudomolecule_IMGAG_V3 11230191-11229079
E EGN_Mt090430 20090702
Length = 370
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVKT 76
E T LP E+ + IL RLP+ SLI K VC SW +L DP A HF +T
Sbjct: 2 ETKTGLYLPHELIIQILLRLPVKSLIRFKCVCKSWLTLISDPHFAKSHFDLSTRT 56
>IMGA|Medtr4g024270.1 Cyclin-like F-box; F-box protein interaction
domain chr04_pseudomolecule_IMGAG_V3 5519058-5520461 E
EGN_Mt090430 20090702
Length = 354
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
E T+ LP E+ + IL RLP+ SLI K VC SW SL DP HF
Sbjct: 2 EKKTVLYLPHELIIQILMRLPVKSLICFKCVCKSWFSLISDPHFENSHF 50
>IMGA|Medtr5g082830.1 Cyclin-like F-box
chr05_pseudomolecule_IMGAG_V3 31272895-31273227 H
EGN_Mt090430 20090702
Length = 110
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 KIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSR 72
+I + + + LP IA +IL RLPI S+I K VC +W ++ DP A +HF R
Sbjct: 28 EIQELSPSFADLPFPIATDILLRLPIKSVIICKCVCRTWNTVISDPHFAKVHFER 82
>IMGA|Medtr5g082790.1 Cyclin-like F-box
chr05_pseudomolecule_IMGAG_V3 31208943-31209275 H
EGN_Mt090430 20090702
Length = 110
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 KIHQEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSR 72
+I + + + LP IA +IL RLPI S+I K VC +W ++ DP A +HF R
Sbjct: 28 EIQELSPSFADLPFPIATDILLRLPIKSVIICKCVCRTWNTVISDPHFAKVHFER 82
>IMGA|Medtr3g024910.1 Cyclin-like F-box
chr03_pseudomolecule_IMGAG_V3 6362906-6363591 H
EGN_Mt090430 20090702
Length = 198
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 26 MDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVKT 76
+ +LP ++ L IL RLP+ SL+ K VC SW+S P A HF KT
Sbjct: 46 LPTLPFDLVLEILYRLPVKSLMQFKCVCKSWKSFISHPKFAKKHFCVSTKT 96
>IMGA|Medtr4g024320.1 Cyclin-like F-box; F-box protein interaction
domain chr04_pseudomolecule_IMGAG_V3 5538082-5539146 E
EGN_Mt090430 20090702
Length = 309
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
E T+ LP E+ + IL RLP+ SLI K VC SW S DP HF
Sbjct: 2 EKKTVLYLPHELIIQILMRLPVKSLICFKCVCKSWFSFISDPHFENSHF 50
>IMGA|Medtr1g031760.1 Cyclin-like F-box
chr01_pseudomolecule_IMGAG_V3 7758708-7756850 H
EGN_Mt090430 20090702
Length = 256
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 22 EATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
+AT M SLP E+ + ILSR+ +++ + ++ VC W+SL DPL T HF
Sbjct: 3 KATAM-SLPNEVMIEILSRVDLSNHLELRCVCKLWKSLVLDPLFMTNHF 50
>IMGA|Medtr4g092970.1 Cyclin-like F-box; F-box protein interaction
domain chr04_pseudomolecule_IMGAG_V3 19546015-19547021
E EGN_Mt090430 20090702
Length = 274
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 21 QEATTMDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSRMVKT 76
++ TT+ LP E+ IL RLP+ SL KSV W SL DP A HF T
Sbjct: 10 KKTTTLPYLPHELIFQILLRLPVKSLTRFKSVSKLWFSLISDPNFANSHFQLTTTT 65
>IMGA|Medtr8g029600.1 Cyclin-like F-box
chr08_pseudomolecule_IMGAG_V3 6567363-6566963 H
EGN_Mt090430 20090702
Length = 103
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 26 MDSLPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
+ +LP ++ L IL RLP+ SL+ K VC SW+S P A HF
Sbjct: 46 LPTLPFDLVLEILYRLPVKSLMQFKCVCKSWKSFISHPKFAKKHF 90
>IMGA|Medtr4g024600.1 Cyclin-like F-box
chr04_pseudomolecule_IMGAG_V3 5653022-5653327 E
EGN_Mt090430 20090702
Length = 101
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 25/42 (59%)
Query: 29 LPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
LPRE+ + IL LP+ SLI K VC W SL DP A HF
Sbjct: 10 LPRELIIQILMWLPVKSLIRFKCVCKLWFSLISDPHFANSHF 51
>IMGA|Medtr7g047610.1 Cyclin-like F-box
chr07_pseudomolecule_IMGAG_V3 11984035-11984501 H
EGN_Mt090430 20090702
Length = 137
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 29 LPREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHFSR 72
LP E+ + +LS LP+ +L+ ++S C SW SL DPL H R
Sbjct: 22 LPDELIVEVLSFLPVKTLMRLRSCCKSWNSLVSDPLFVKSHLQR 65
>IMGA|Medtr2g129450.1 Cyclin-like F-box; F-box protein interaction
domain chr02_pseudomolecule_IMGAG_V3 31309245-31310164
E EGN_Mt090430 20090702
Length = 297
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 30 PREIALNILSRLPITSLIHVKSVCLSWRSLAQDPLLATMHF 70
P EI ILSRLP+ L+ ++SVC SW+SL DP H
Sbjct: 52 PFEIVAEILSRLPVKYLMQLQSVCKSWKSLISDPKFIKKHL 92