Jatropha Genome Database

JcCB0397691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0397691.10 - phase: 1 /partial
         (232 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g126840.1 Alpha amylase, C-terminal all-beta; chr07_p...   287   4e-78

>IMGA|Medtr7g126840.1 Alpha amylase, C-terminal all-beta;
           chr07_pseudomolecule_IMGAG_V3 29566181-29557255 E
           EGN_Mt090430 20090702
          Length = 388

 Score =  287 bits (734), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/234 (61%), Positives = 169/234 (72%), Gaps = 12/234 (5%)

Query: 8   FNEYFSEATYVDAVVYLMLANSLIHNTLPDATVIAEDVSGMPGLGHDVSEGGIGFDYRLA 67
           +NEYF  AT V+AVVYLML N LIH   P+A  I EDVSGMP       +GGIGF+YRL 
Sbjct: 30  YNEYFGFATDVEAVVYLMLVNDLIHGLYPEAVSIGEDVSGMPTFCLPTQDGGIGFNYRLH 89

Query: 68  MAIPDKWIDYLKNKSDEEWSMEEIAWSLTNRRYTEKCVAYAESHDQAIVGDKTVAFLLMD 127
           MA+ DKWID LK K DE+W M +I  +LTNRR+ E CV YAESHDQA+VGDKT+AF LMD
Sbjct: 90  MAVADKWIDLLK-KKDEDWRMGDIVHTLTNRRWLENCVVYAESHDQALVGDKTLAFWLMD 148

Query: 128 KEMYSGMSCLTDAPPIIERGIALHKMVHFLTMALGGEGYLNFMGNEFGHPEWIDFPR--- 184
           K+MY  M+    + P+I+RGIALHKM+  +TM LGGEGYLNFMGNEFGHPEWIDFPR   
Sbjct: 149 KDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQ 208

Query: 185 --------EGNGWSYDKCRRQWNLVDTEHLRYKFMNAFDRAMNGLDEKYSFLAS 230
                    GN  SYDKCRR+++L D E+LRY  M  FDRAM  L+E+Y F+ S
Sbjct: 209 HLPNGTVVPGNNNSYDKCRRRFDLGDAEYLRYHGMQEFDRAMQHLEERYGFMIS 262