Jatropha Genome Database

JcCB0393011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0393011.10 + phase: 0 
         (67 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g008510.1 hypothetical protein chr01_pseudomolecule_I...    68   9e-13

>IMGA|Medtr1g008510.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 792575-786573 E
           EGN_Mt090430 20090702
          Length = 579

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 2   QLHCDHGLQGFQWNTIFGFQHQETSENYTRIGKADSSERELAVRAAAASIYSTCSFLMSK 61
           QL CD G+Q   W+  +G     TSEN++R  + D SE+ELAV AAAASIYSTC+FL S+
Sbjct: 516 QLLCDQGVQHINWSKGYGLPQLATSENHSRSSQIDISEKELAVNAAAASIYSTCNFLTSE 575

Query: 62  ENVSC 66
             +SC
Sbjct: 576 --LSC 578