Jatropha Genome Database

JcCB0392311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0392311.10 + phase: 0 
         (143 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g154880.1 ZIM chr04_pseudomolecule_IMGAG_V3 38122104-...    87   4e-18
IMGA|Medtr2g024430.1 hypothetical protein chr02_pseudomolecule_I...    59   1e-09

>IMGA|Medtr4g154880.1 ZIM chr04_pseudomolecule_IMGAG_V3
           38122104-38123465 E EGN_Mt090430 20090702
          Length = 118

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 21/134 (15%)

Query: 1   MRRNC-NLELRLFPFPDSDD-DHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGNI 58
           MRRNC NLEL LFP  DS + ++  + +    +SP                LTIFY+G +
Sbjct: 1   MRRNCSNLELCLFPLYDSGNHNNSNHHIGVEEESPMQNQQQ---------PLTIFYDGKM 51

Query: 59  CVCDVTELQARNILMLASR-EMDDKIRSAXXXXXXXXXXXXXXVYSPNNGLSMKRSLQRF 117
           C+ DVTE QA++ILMLA++ ++ +K+++                    +GLSMKRSLQRF
Sbjct: 52  CLTDVTEFQAKSILMLANKIKLQEKVKTPRGSEPTTPV---------QSGLSMKRSLQRF 102

Query: 118 LQKRNHRIQATYPY 131
           LQKR +R+Q   PY
Sbjct: 103 LQKRKNRVQEASPY 116


>IMGA|Medtr2g024430.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 6181975-6180463 E
           EGN_Mt090430 20090702
          Length = 134

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 73/135 (54%), Gaps = 7/135 (5%)

Query: 1   MRRNCNLELRLFPFPDSDDDHRRYFVDESNKSPXXXXXXXXXXXXXXXKLTIFYNGNICV 60
           MRRNCNLEL LFP  +S                                     N     
Sbjct: 1   MRRNCNLELCLFPPYNSXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXNNTTQS 57

Query: 61  CDVTELQARNILMLASR-EMDDKIRS---AXXXXXXXXXXXXXXVYSPNNGLSMKRSLQR 116
             +T + A++ILMLA+R ++ +K+ +   +              +YSP  GLSMKRSLQR
Sbjct: 58  RPITFIIAKSILMLANRIKVQEKVMTPIGSEPSTPTTIVQSPHQLYSPGPGLSMKRSLQR 117

Query: 117 FLQKRNHRIQATYPY 131
           FLQKR +R+Q   PY
Sbjct: 118 FLQKRKNRVQEASPY 132