Jatropha Genome Database

JcCB0389891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0389891.20 - phase: 0 
         (99 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g104180.1 Porphobilinogen deaminase chr04_pseudomolec...   133   2e-32
IMGA|Medtr4g104170.1 Porphobilinogen deaminase chr04_pseudomolec...   132   4e-32

>IMGA|Medtr4g104180.1 Porphobilinogen deaminase
           chr04_pseudomolecule_IMGAG_V3 22656866-22660007 E
           EGN_Mt090430 20090702
          Length = 228

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 72/77 (93%), Gaps = 1/77 (1%)

Query: 10  VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGI 69
           V +NFRGNVQTRLRKL+EGVV+ATLLALAGLKRLNMTENVTS LSIDDMLPAVAQGAIGI
Sbjct: 64  VQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGI 123

Query: 70  ACRSNDDKMVRLYLSNL 86
           ACRSNDDKM   YL++L
Sbjct: 124 ACRSNDDKMAE-YLASL 139


>IMGA|Medtr4g104170.1 Porphobilinogen deaminase
           chr04_pseudomolecule_IMGAG_V3 22656866-22659888 F
           EGN_Mt090430 20090702
          Length = 369

 Score =  132 bits (332), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/77 (87%), Positives = 72/77 (93%), Gaps = 1/77 (1%)

Query: 10  VLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTSILSIDDMLPAVAQGAIGI 69
           V +NFRGNVQTRLRKL+EGVV+ATLLALAGLKRLNMTENVTS LSIDDMLPAVAQGAIGI
Sbjct: 205 VQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGI 264

Query: 70  ACRSNDDKMVRLYLSNL 86
           ACRSNDDKM   YL++L
Sbjct: 265 ACRSNDDKMAE-YLASL 280