Jatropha Genome Database

JcCB0389841.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0389841.10 + phase: 2 /partial
         (324 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g014880.1 Malate dehydrogenase, active site chr05_pse...   374   e-104
IMGA|Medtr4g121950.1 Lactate/malate dehydrogenase chr04_pseudomo...   363   e-101
IMGA|Medtr2g026780.1 Malate dehydrogenase, NAD-dependent, eukary...    59   3e-09
IMGA|Medtr2g052450.1 Malate dehydrogenase, NAD-dependent, eukary...    59   3e-09
IMGA|Medtr1g042850.1 Malate dehydrogenase, active site chr01_pse...    48   6e-06

>IMGA|Medtr5g014880.1 Malate dehydrogenase, active site
           chr05_pseudomolecule_IMGAG_V3 4854217-4849943 F
           EGN_Mt090430 20090702
          Length = 358

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/269 (68%), Positives = 214/269 (79%)

Query: 56  PDRKVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIANTPGVAADVSHINTRSEVKGYVG 115
           P  KVA+LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV +D+SH++T + V+G++G
Sbjct: 45  PGFKVAILGAAGGIGQPLSMLMKINPLVSVLHLYDVVNTPGVTSDISHMDTSAVVRGFLG 104

Query: 116 EDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYCPNALVNMISN 175
           ++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC+AI+K CP A+VN+ISN
Sbjct: 105 QNQLEDALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKQCPKAIVNLISN 164

Query: 176 PVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 235
           PVNSTVPIAAEVFK+AGTYD KRL GVT LDVVRA TF A               GGHAG
Sbjct: 165 PVNSTVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVAEVMGLDPRDVDVPVVGGHAG 224

Query: 236 ITILPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 295
           ITILPL SQ  P ++ + ++IE LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct: 225 ITILPLLSQVKPPSSFTPKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 284

Query: 296 LKGLNGVPDVVECTFVQSSVTELPFFASK 324
           L+ L G  D+V+C +V S VTELPFFASK
Sbjct: 285 LRALKGEADIVQCAYVDSQVTELPFFASK 313


>IMGA|Medtr4g121950.1 Lactate/malate dehydrogenase
           chr04_pseudomolecule_IMGAG_V3 28769923-28766972 E
           EGN_Mt090430 20090702
          Length = 356

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/269 (67%), Positives = 211/269 (78%)

Query: 56  PDRKVAVLGAAGGIGQPLALLMKLNPLVSNLALYDIANTPGVAADVSHINTRSEVKGYVG 115
           P  KVAVLGAAGGIGQ L+LL+K+NPLVS L LYD+ NTPGV ADVSH++T + V+G++G
Sbjct: 43  PGFKVAVLGAAGGIGQSLSLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLG 102

Query: 116 EDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKYCPNALVNMISN 175
           + QL  AL G D+V+IPAGVPRKPGMTRDDLF INAGIV+ LC+ I+K CPNA+VN+ISN
Sbjct: 103 QPQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISN 162

Query: 176 PVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGXXXXXXXXXXXXXXGGHAG 235
           PVNSTVPIAAEVFKKAGTYD KRL GVT LDVVRA TF A               GGHAG
Sbjct: 163 PVNSTVPIAAEVFKKAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPRDVDVPVVGGHAG 222

Query: 236 ITILPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 295
           +TILPL SQ  P ++ ++E+ E LT R Q+GGTEVVEAKAG GSATLSMAYA A FA++C
Sbjct: 223 VTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSC 282

Query: 296 LKGLNGVPDVVECTFVQSSVTELPFFASK 324
           L GL G   V+EC +V S VTELPFFA+K
Sbjct: 283 LHGLKGEAGVIECAYVDSQVTELPFFATK 311


>IMGA|Medtr2g026780.1 Malate dehydrogenase, NAD-dependent,
           eukaryotes and gamma proteobacteria
           chr02_pseudomolecule_IMGAG_V3 7365715-7368699 H
           EGN_Mt090430 20090702
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 231 GGHAGITILPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAK 274
           GGHAG+TILPL SQA   ++ ++E+ E LT R Q+GGTEVVE++
Sbjct: 60  GGHAGVTILPLLSQAKSPSSFTAEETEYLTNRIQNGGTEVVESQ 103


>IMGA|Medtr2g052450.1 Malate dehydrogenase, NAD-dependent,
           eukaryotes and gamma proteobacteria
           chr02_pseudomolecule_IMGAG_V3 14240005-14237019 H
           EGN_Mt090430 20090702
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 231 GGHAGITILPLFSQATPKANLSSEDIEALTKRTQDGGTEVVEAK 274
           GGHAG+TILPL SQA   ++ ++E+ E LT R Q+GGTEVVE++
Sbjct: 60  GGHAGVTILPLLSQAKSPSSFTAEETEYLTNRIQNGGTEVVESQ 103


>IMGA|Medtr1g042850.1 Malate dehydrogenase, active site
           chr01_pseudomolecule_IMGAG_V3 9957754-9962850 E
           EGN_Mt090430 20090702
          Length = 332

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 18/164 (10%)

Query: 59  KVAVLGAAGGIGQPLA-------LLMKLNPLVSNLALYDIA----NTPGVAADVSHINTR 107
           +V V GAAG IG  L        +L    P++  L + DIA    +  GV  ++      
Sbjct: 7   RVLVTGAAGQIGYALVPMIARGVMLGPDQPVI--LHMLDIAPAAESLNGVKMELVDA-AF 63

Query: 108 SEVKGYVGEDQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCQAISKY-CP 166
             +KG V    + +A  G ++ ++  G PRK GM R D+ + N  I K    A+ K+   
Sbjct: 64  PLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAA 123

Query: 167 NALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRA 210
           N  V +++NP N+   I  E    A +  E+ +  +T LD  RA
Sbjct: 124 NCKVLVVANPANTNALILKEF---APSIPERNISCLTRLDHNRA 164