Jatropha Genome Database

JcCB0386201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0386201.10 - phase: 0 
         (218 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g143530.2 Zinc finger, RING-type chr01_pseudomolecule...   130   5e-31
IMGA|Medtr1g143530.1 Zinc finger, RING-type chr01_pseudomolecule...   123   6e-29

>IMGA|Medtr1g143530.2 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 31712374-31718707 E
           EGN_Mt090430 20090702
          Length = 333

 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 91/175 (52%), Gaps = 8/175 (4%)

Query: 45  DEEEQEAQPP-----RQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDYG 99
           DE E E Q        Q   RTPFTNLSQVDADLALARTLQEQERAYMMLR  N+GSDYG
Sbjct: 52  DEHEAEQQQTGSETNTQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYG 111

Query: 100 SWEAGSYFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADV---DN 156
           SWE GSY                                   D      H  A V   +N
Sbjct: 112 SWEGGSYLHDDGDDFDDLHDGTDVDDEDDDEDDDNEEDYEDEDEDAFDVHDHASVGDREN 171

Query: 157 NPAVDLDPAMFSSDEAYARALQDXXXXXXXXXXXXXXGINEREVEDVEDLGANSQ 211
           NP ++ DP +FSSDEAYARALQ+              GI++++ ED+E+  ANSQ
Sbjct: 172 NPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDQDAEDMEEHAANSQ 226


>IMGA|Medtr1g143530.1 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 31712374-31718707 E
           EGN_Mt090430 20090702
          Length = 339

 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 94/182 (51%), Gaps = 10/182 (5%)

Query: 40  NDNNGDEEEQE-AQPPRQSSRRTPFTNLSQVDADLALARTLQEQERAYMMLRFGNEGSDY 98
           ND +  E++Q  ++   Q   RTPFTNLSQVDADLALARTLQEQERAYMMLR  N+GSDY
Sbjct: 51  NDEHEAEQQQTGSETNTQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDY 110

Query: 99  GSWEAGSYFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDAFDVHAHTDADV---D 155
           GSWE GSY                                   D      H  A V   +
Sbjct: 111 GSWEGGSYLHDDGDDFDDLHDGTDVDDEDDDEDDDNEEDYEDEDEDAFDVHDHASVGDRE 170

Query: 156 NNPAVDLDPAMFSSDEAYARALQDXXXXXXXXXXXXXXGINE------REVEDVEDLGAN 209
           NNP ++ DP +FSSDEAYARALQ+              GI++       + ED+E+  AN
Sbjct: 171 NNPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSITEDAEDMEEHAAN 230

Query: 210 SQ 211
           SQ
Sbjct: 231 SQ 232