Jatropha Genome Database

JcCB0384321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0384321.10 - phase: 2 /partial
         (176 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g017530.1 Ribosomal protein S6e chr02_pseudomolecule_...   216   4e-57
IMGA|Medtr7g043400.1 Ribosomal protein S6e chr07_pseudomolecule_...   214   2e-56
IMGA|Medtr2g017530.2 Ribosomal protein S6e chr02_pseudomolecule_...    80   7e-16

>IMGA|Medtr2g017530.1 Ribosomal protein S6e
           chr02_pseudomolecule_IMGAG_V3 4385254-4388559 E
           EGN_Mt090430 20090702
          Length = 248

 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/127 (82%), Positives = 107/127 (84%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           S DLSVLNLVIVKKGENDLPGLTD EKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR
Sbjct: 105 SPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR 164

Query: 121 TFTTKSG 127
           TFTTK+G
Sbjct: 165 TFTTKAG 171


>IMGA|Medtr7g043400.1 Ribosomal protein S6e
           chr07_pseudomolecule_IMGAG_V3 10727193-10724442 E
           EGN_Mt090430 20090702
          Length = 246

 Score =  214 bits (544), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 114/146 (78%), Gaps = 5/146 (3%)

Query: 1   FKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIV 60
           FKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIV
Sbjct: 45  FKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIV 104

Query: 61  SQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR 120
           S DLSVLNLVIVKKGENDLPGLTD EKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR
Sbjct: 105 SPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR 164

Query: 121 TFTTKSGNISLLRYIYNSPAIVCIIS 146
           TFTTK G     + +  +P I  +++
Sbjct: 165 TFTTKDG-----KKVSKAPKIQRLVT 185


>IMGA|Medtr2g017530.2 Ribosomal protein S6e
           chr02_pseudomolecule_IMGAG_V3 4386667-4388559 E
           EGN_Mt090430 20090702
          Length = 115

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/39 (92%), Positives = 38/39 (97%)

Query: 90  MRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGN 128
           MRGPKRASKIRKLFNLSK+DDVRKYVNTYRRTFTTK+G 
Sbjct: 1   MRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKAGK 39