Jatropha Genome Database

JcCB0383651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0383651.10 + phase: 0 /partial
         (68 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g098330.3 Ribosomal L18ae protein chr05_pseudomolecul...   104   9e-24
IMGA|Medtr2g117520.1 Ribosomal L18ae protein chr02_pseudomolecul...   104   9e-24
IMGA|Medtr5g098360.1 Ribosomal L18ae protein chr05_pseudomolecul...   104   9e-24
IMGA|Medtr5g098330.1 Ribosomal L18ae protein chr05_pseudomolecul...   104   9e-24

>IMGA|Medtr5g098330.3 Ribosomal L18ae protein
          chr05_pseudomolecule_IMGAG_V3 39203439-39204271 F
          EGN_Mt090430 20090702
          Length = 84

 Score =  104 bits (260), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLLT 61
          +FHQYQVVGR LPTE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L + 
Sbjct: 5  KFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAIN 64


>IMGA|Medtr2g117520.1 Ribosomal L18ae protein
          chr02_pseudomolecule_IMGAG_V3 27635062-27636702 E
          EGN_Mt090430 20090702
          Length = 178

 Score =  104 bits (260), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LPTE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  KFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63


>IMGA|Medtr5g098360.1 Ribosomal L18ae protein
          chr05_pseudomolecule_IMGAG_V3 39212270-39214469 E
          EGN_Mt090430 20090702
          Length = 178

 Score =  104 bits (260), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LPTE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  KFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63


>IMGA|Medtr5g098330.1 Ribosomal L18ae protein
          chr05_pseudomolecule_IMGAG_V3 39203439-39205830 F
          EGN_Mt090430 20090702
          Length = 178

 Score =  104 bits (260), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 2  QFHQYQVVGRGLPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVRRAMAKYLLL 60
          +FHQYQVVGR LPTE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKV+++  + L +
Sbjct: 5  KFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAI 63