Jatropha Genome Database

JcCB0379211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0379211.10 - phase: 0 /partial
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g095440.1 Adaptin, N-terminal; AP2 clathrin adaptor, ...   349   4e-97
IMGA|Medtr3g159510.1 Adaptin, N-terminal; AP2 clathrin adaptor, ...   340   2e-94

>IMGA|Medtr4g095440.1 Adaptin, N-terminal; AP2 clathrin adaptor,
           alpha and beta chain, appendage; ; ;
           chr04_pseudomolecule_IMGAG_V3 19859254-19866796 E
           EGN_Mt090430 20090702
          Length = 885

 Score =  349 bits (895), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 169/179 (94%), Positives = 176/179 (98%)

Query: 1   PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 60
           PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS
Sbjct: 155 PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 214

Query: 61  KLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGANTQTGDRPFYDFLEGCLRHKAEMVIFE 120
           KLVTSLTRG+VRSPLAQCLLIRYTSQVIRESG  TQ+G+RPFYDFLE CLRHK+EMVIFE
Sbjct: 215 KLVTSLTRGSVRSPLAQCLLIRYTSQVIRESGNITQSGERPFYDFLESCLRHKSEMVIFE 274

Query: 121 AARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID 179
           AA+AIT+L+GVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID
Sbjct: 275 AAKAITDLNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID 333


>IMGA|Medtr3g159510.1 Adaptin, N-terminal; AP2 clathrin adaptor,
           alpha and beta chain, appendage; ; ;
           chr03_pseudomolecule_IMGAG_V3 41757228-41747971 E
           EGN_Mt090430 20090702
          Length = 887

 Score =  340 bits (872), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 163/179 (91%), Positives = 170/179 (94%)

Query: 1   PVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVS 60
           P+VASAALVSGIHLLQTNPEIVKRWSNEVQE+VQSRAA VQFHAL LLHQIRQNDRLAVS
Sbjct: 155 PIVASAALVSGIHLLQTNPEIVKRWSNEVQESVQSRAAFVQFHALGLLHQIRQNDRLAVS 214

Query: 61  KLVTSLTRGTVRSPLAQCLLIRYTSQVIRESGANTQTGDRPFYDFLEGCLRHKAEMVIFE 120
           KLV+SLTRG VRSPLAQCLLIRYTSQVI ESG NTQ+GDRPFYDFLE CLRHK+EMVIFE
Sbjct: 215 KLVSSLTRGAVRSPLAQCLLIRYTSQVICESGNNTQSGDRPFYDFLESCLRHKSEMVIFE 274

Query: 121 AARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNID 179
           AARAITEL+GVTSREL PAITVLQLFLSSSKPVLRFAAVRTLNKVAM HP +VTNCNID
Sbjct: 275 AARAITELNGVTSRELNPAITVLQLFLSSSKPVLRFAAVRTLNKVAMIHPTSVTNCNID 333