Jatropha Genome Database

JcCB0376161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0376161.10 + phase: 1 /pseudo/partial
         (180 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g137730.1 UDP-glucose 4-epimerase chr04_pseudomolecul...   308   6e-85
IMGA|Medtr4g137730.2 UDP-glucose 4-epimerase chr04_pseudomolecul...   308   9e-85
IMGA|Medtr5g009210.1 UDP-glucose 4-epimerase chr05_pseudomolecul...   117   2e-27
IMGA|Medtr5g009210.2 UDP-glucose 4-epimerase chr05_pseudomolecul...   117   4e-27
IMGA|Medtr5g009200.1 UDP-glucose 4-epimerase chr05_pseudomolecul...   110   4e-25
IMGA|Medtr5g009200.2 UDP-glucose 4-epimerase chr05_pseudomolecul...   110   5e-25

>IMGA|Medtr4g137730.1 UDP-glucose 4-epimerase
           chr04_pseudomolecule_IMGAG_V3 33993450-33997060 E
           EGN_Mt090430 20090702
          Length = 397

 Score =  308 bits (790), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 157/172 (91%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           MI RYFNVIGSDP+GRLGEAPRPELRE GRISGACFDAARGII GLKV+GTDYKT DGTC
Sbjct: 225 MILRYFNVIGSDPEGRLGEAPRPELREQGRISGACFDAARGIIPGLKVRGTDYKTSDGTC 284

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVGIYNVGTGKGRSVNEFVEACKKATGVNIKVDYLP 125
           IRDYIDVTDLVDAHVKALE+A+P KVGIYNVGTGKG SV EFVEACKKATGVNIKV++LP
Sbjct: 285 IRDYIDVTDLVDAHVKALEKAVPAKVGIYNVGTGKGSSVKEFVEACKKATGVNIKVEFLP 344

Query: 126 RRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSPLV 177
           RRPGDYAEV+SDPTKI  EL W+AQ T+L+ESL+ AWRWQKSH +GYG P V
Sbjct: 345 RRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHHDGYGIPNV 396


>IMGA|Medtr4g137730.2 UDP-glucose 4-epimerase
           chr04_pseudomolecule_IMGAG_V3 33992473-33997060 E
           EGN_Mt090430 20090702
          Length = 266

 Score =  308 bits (789), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 157/172 (91%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           MI RYFNVIGSDP+GRLGEAPRPELRE GRISGACFDAARGII GLKV+GTDYKT DGTC
Sbjct: 94  MILRYFNVIGSDPEGRLGEAPRPELREQGRISGACFDAARGIIPGLKVRGTDYKTSDGTC 153

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVGIYNVGTGKGRSVNEFVEACKKATGVNIKVDYLP 125
           IRDYIDVTDLVDAHVKALE+A+P KVGIYNVGTGKG SV EFVEACKKATGVNIKV++LP
Sbjct: 154 IRDYIDVTDLVDAHVKALEKAVPAKVGIYNVGTGKGSSVKEFVEACKKATGVNIKVEFLP 213

Query: 126 RRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSPLV 177
           RRPGDYAEV+SDPTKI  EL W+AQ T+L+ESL+ AWRWQKSH +GYG P V
Sbjct: 214 RRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHHDGYGIPNV 265


>IMGA|Medtr5g009210.1 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1959897-1955975 F
           EGN_Mt090430 20090702
          Length = 392

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHG---RISGACFDAARGIISGLKVKGTDYKTHD 62
           M+ RYFN +G+ P G +GE P      HG    +       A G    L V G DYKT D
Sbjct: 221 MLLRYFNPVGAHPSGYIGEDP------HGIPNNLMPFIQQVAVGRRPALTVFGNDYKTVD 274

Query: 63  GTCIRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIK 120
           GT +RDYI V DL D H+ AL +     +G  +YN+GTGKG SV E V A +KA+G  I 
Sbjct: 275 GTGVRDYIHVVDLADGHIAALRKLEEADIGCDVYNLGTGKGTSVLEMVRAFEKASGKKIP 334

Query: 121 VDYLPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSP 175
           +    RRPGD   V++   K   EL W A++  + E  +  W W   +  GYGSP
Sbjct: 335 LVKAGRRPGDAEIVYASTKKAERELKWKAKY-GIDEMCRDQWNWASKNPYGYGSP 388


>IMGA|Medtr5g009210.2 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1959897-1955975 F
           EGN_Mt090430 20090702
          Length = 172

 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHG---RISGACFDAARGIISGLKVKGTDYKTHD 62
           M+ RYFN +G+ P G +GE P      HG    +       A G    L V G DYKT D
Sbjct: 1   MLLRYFNPVGAHPSGYIGEDP------HGIPNNLMPFIQQVAVGRRPALTVFGNDYKTVD 54

Query: 63  GTCIRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIK 120
           GT +RDYI V DL D H+ AL +     +G  +YN+GTGKG SV E V A +KA+G  I 
Sbjct: 55  GTGVRDYIHVVDLADGHIAALRKLEEADIGCDVYNLGTGKGTSVLEMVRAFEKASGKKIP 114

Query: 121 VDYLPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSP 175
           +    RRPGD   V++   K   EL W A++  + E  +  W W   +  GYGSP
Sbjct: 115 LVKAGRRPGDAEIVYASTKKAERELKWKAKYG-IDEMCRDQWNWASKNPYGYGSP 168


>IMGA|Medtr5g009200.1 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1955431-1951450 E
           EGN_Mt090430 20090702
          Length = 349

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           ++SRYFN +G+ P G +GE PR        +       A G    L + G DY T DGT 
Sbjct: 178 ILSRYFNPVGAHPSGYIGEDPR---GVPNNLMPFIQQVAVGRRPALTIFGNDYNTVDGTG 234

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIKVDY 123
           +RD+I V DL D H+ AL +     +G  +YN+GTGKG SV+E V A + A+G  I +  
Sbjct: 235 VRDFIHVVDLADGHIAALLKLEEADIGCEVYNLGTGKGTSVSEIVRAFEHASGKKIPLVK 294

Query: 124 LPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSP 175
             RRPGD   V++   K   EL W A++  + +  +  W W   +  GYG P
Sbjct: 295 AGRRPGDAEIVYASTEKAERELKWKAKY-GIDDMCRDQWNWASKNPYGYGPP 345


>IMGA|Medtr5g009200.2 UDP-glucose 4-epimerase
           chr05_pseudomolecule_IMGAG_V3 1955431-1951450 E
           EGN_Mt090430 20090702
          Length = 286

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 6   MISRYFNVIGSDPDGRLGEAPRPELREHGRISGACFDAARGIISGLKVKGTDYKTHDGTC 65
           ++SRYFN +G+ P G +GE PR        +       A G    L + G DY T DGT 
Sbjct: 115 ILSRYFNPVGAHPSGYIGEDPR---GVPNNLMPFIQQVAVGRRPALTIFGNDYNTVDGTG 171

Query: 66  IRDYIDVTDLVDAHVKALERALPRKVG--IYNVGTGKGRSVNEFVEACKKATGVNIKVDY 123
           +RD+I V DL D H+ AL +     +G  +YN+GTGKG SV+E V A + A+G  I +  
Sbjct: 172 VRDFIHVVDLADGHIAALLKLEEADIGCEVYNLGTGKGTSVSEIVRAFEHASGKKIPLVK 231

Query: 124 LPRRPGDYAEVFSDPTKIRLELNWTAQHTDLQESLQIAWRWQKSHRNGYGSP 175
             RRPGD   V++   K   EL W A++  + +  +  W W   +  GYG P
Sbjct: 232 AGRRPGDAEIVYASTEKAERELKWKAKY-GIDDMCRDQWNWASKNPYGYGPP 282