Jatropha Genome Database

JcCB0375141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0375141.10 - phase: 0 /pseudo/partial
         (241 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g139140.1 DNA-directed DNA polymerase B chr07_pseudom...   373   e-104
IMGA|Medtr3g143080.1 DNA-directed DNA polymerase B chr03_pseudom...   140   5e-34
IMGA|Medtr5g017000.1 DNA-directed DNA polymerase B chr05_pseudom...    54   7e-08

>IMGA|Medtr7g139140.1 DNA-directed DNA polymerase B
           chr07_pseudomolecule_IMGAG_V3 33209886-33202421 H
           EGN_Mt090430 20090702
          Length = 1012

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/224 (80%), Positives = 199/224 (88%), Gaps = 15/224 (6%)

Query: 24  QVRKGVLPRLLEEILSTRIMVKQAMKKLAPTELVLHR---------------IFNARQLA 68
           ++R+GVLPRLLEEILSTRIMVKQAMKKL+P+E VL R               IFNARQLA
Sbjct: 530 KIRRGVLPRLLEEILSTRIMVKQAMKKLSPSEQVLQRVLLLFMDSIASAMFSIFNARQLA 589

Query: 69  LKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTD 128
           LKLI+NVTYGYTAAGFSGRMPCAELADSIVQCGR TLEKAIS VN ++KWNAKVIYGDTD
Sbjct: 590 LKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAKVIYGDTD 649

Query: 129 SMFVLLKGRTVKESFQIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENA 188
           SMFVLLKGRT KE+FQIG+EIASA+TAMNP+PVTLK+EKVYHPCFL+TKKRYVGYSYEN 
Sbjct: 650 SMFVLLKGRTAKEAFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLITKKRYVGYSYENP 709

Query: 189 DQIEPVFDAKGIETVRRDTCGAVAKMMEQSLRLFLEHQNMSEVE 232
           +QIEPVFDAKGIETVRRDTC AVAK+MEQSLRLF EHQ++ EV+
Sbjct: 710 NQIEPVFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVK 753


>IMGA|Medtr3g143080.1 DNA-directed DNA polymerase B
           chr03_pseudomolecule_IMGAG_V3 36816794-36819651 E
           EGN_Mt090430 20090702
          Length = 337

 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 14/213 (6%)

Query: 24  QVRKGVLPRLLEEILSTRIMVKQAMKKLA-PTELVLHRIFNARQLALKLIANVTYGYTAA 82
            ++KG+LP +LEE+L+ R   K  +K+   P E     + + RQLALK+ AN  YG+T A
Sbjct: 76  NLQKGILPEILEELLAARKRAKADLKEAKDPLE---KAVLDGRQLALKISANSVYGFTGA 132

Query: 83  GFSGRMPCAELADSIVQCGRSTLEKAISLV-------NANDKWNAKVIYGDTDSMFVLLK 135
              G++PC E++ S+   GR  +E    LV       N  D  NA+VIYGDTDS+ V   
Sbjct: 133 SI-GQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTRLNGYDN-NAEVIYGDTDSVMVQFG 190

Query: 136 GRTVKESFQIGNEIASAVTAMNPNPVTLKLEKVYHPCFLLTKKRYVGYSYENADQIEPVF 195
             TVK++  +G E A  ++     P+ L+ EKVY P  L++KKRY G  +   D  + + 
Sbjct: 191 VSTVKDAMDLGKEAAEHISGTFTKPIKLEFEKVYCPYLLISKKRYAGLFWTKEDSHDKM- 249

Query: 196 DAKGIETVRRDTCGAVAKMMEQSLRLFLEHQNM 228
           D KGIETVRRD C  V  ++   L   L  +N+
Sbjct: 250 DTKGIETVRRDNCLLVKNLVNDCLHKILIEKNI 282


>IMGA|Medtr5g017000.1 DNA-directed DNA polymerase B
            chr05_pseudomolecule_IMGAG_V3 6066040-6054333 E
            EGN_Mt090430 20090702
          Length = 1410

 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 28   GVLPRLLEEILSTRIMVKQAMKKLAPTELVLHRIFNARQLALKLIANVTYGYTAAGFSG- 86
            GVLP LL++++  R   K  MK  +  +    +  +  Q ALKL AN  YG    GFS  
Sbjct: 951  GVLPELLKKLVKLRREKKTWMKTASGLK---RQQLDIEQQALKLTANSMYG--CLGFSNS 1005

Query: 87   RMPCAELADSIVQCGRSTLEKAISLVNANDKWNAKVIYGDTDSMFV 132
            R     LA+ I   GR  L+  + LV  N   N +VIYGDTDS+ +
Sbjct: 1006 RFYAKPLAELITLQGREILQSTVDLVQNN--LNLEVIYGDTDSIMI 1049