Jatropha Genome Database

JcCB0372261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0372261.10 - phase: 2 /pseudo/partial
         (231 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g010450.1 Frigida-like chr02_pseudomolecule_IMGAG_V3 ...    79   2e-15
IMGA|Medtr5g086190.1 Frigida-like chr05_pseudomolecule_IMGAG_V3 ...    69   2e-12
IMGA|Medtr5g101880.1 Frigida-like chr05_pseudomolecule_IMGAG_V3 ...    68   4e-12
IMGA|Medtr3g077030.1 Frigida-like chr03_pseudomolecule_IMGAG_V3 ...    66   2e-11
IMGA|Medtr8g099150.1 Frigida-like chr08_pseudomolecule_IMGAG_V3 ...    63   1e-10
IMGA|Medtr2g132680.1 Frigida-like chr02_pseudomolecule_IMGAG_V3 ...    54   5e-08
IMGA|Medtr2g132650.1 Frigida-like chr02_pseudomolecule_IMGAG_V3 ...    50   1e-06

>IMGA|Medtr2g010450.1 Frigida-like chr02_pseudomolecule_IMGAG_V3
           2539346-2543148 E EGN_Mt090430 20090702
          Length = 840

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 2/142 (1%)

Query: 59  GKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNF 118
           G+N  +P+ V+ FL  L+ Y L S+F              H+   EL   +GLA  + +F
Sbjct: 680 GENTENPVPVLGFLLLLSIYGLVSSFDEDEILKLFGFAAQHKISVELFGTMGLAHKVSDF 739

Query: 119 IKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSN--SAKELQNENRNSTKVQIRAI 176
           ++NLI K+Q I AV++I A +   K   V +L++H+ N  S  E   +  NS +++ +A 
Sbjct: 740 VQNLIMKQQYIEAVRFICAYNTATKNQSVGLLREHVQNARSINESSCKATNSIEIKDKAK 799

Query: 177 DRELNALKAVWKCIADYNIQGL 198
           D+E+ +L  V +C++D N++ +
Sbjct: 800 DQEIASLGTVLQCLSDNNMESV 821


>IMGA|Medtr5g086190.1 Frigida-like chr05_pseudomolecule_IMGAG_V3
           33057644-33063524 H EGN_Mt090430 20090702
          Length = 572

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 66  LEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLIKK 125
           L V+ FL  L+ Y L  +F              H+   EL ++LG A  + +F+K+LI +
Sbjct: 392 LAVLGFLMLLSIYKLLDSFDEDEVLELFAFVALHKIAVELFESLGFANRVSDFVKHLINR 451

Query: 126 KQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKELQN--ENRNSTKVQIRAIDRELNAL 183
           KQ + AV++  A D+ D+   V +L++H+ N+    ++  +  NS +++ +A D+E+ +L
Sbjct: 452 KQIVAAVRFSCAYDLDDEDQLVDMLREHVQNAKLICESFCKKTNSIEIKDKARDQEIASL 511

Query: 184 KAVWKCIADYNIQGLSPEVLEERILYWKSIKRRNFKPNS 222
             V +CI++  ++  S ++L + I +   IK +  + N+
Sbjct: 512 GTVLQCISENRLE--SADLLHKEIDHRILIKMKAIRKNA 548


>IMGA|Medtr5g101880.1 Frigida-like chr05_pseudomolecule_IMGAG_V3
           40796115-40799328 E EGN_Mt090430 20090702
          Length = 644

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 64  DPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLI 123
           D ++    + FL+ Y   S                ++++ +L Q + L++ + + I+ LI
Sbjct: 284 DRVQGAGIVQFLSVYDFLSELNVGELAAYSATAATNDELLDLYQIIALSDRVQDVIQKLI 343

Query: 124 KKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNS---AKELQNENRNSTKVQIRAIDREL 180
           ++ ++I+AVK+IF   + +K PPV +LK +++++   AK L +E ++  +++     RE+
Sbjct: 344 ERGKQILAVKFIFHFKLTEKTPPVPVLKAYVNDAEKLAKRLASEGKSLNEIK----SREI 399

Query: 181 NALKAVWKCIADYNIQGLSPEVLEERILYWKSIKRR 216
           +ALK+V K I  YN+    P    ER +   S +R+
Sbjct: 400 HALKSVIKVIESYNLDSEFPRASIERRIEELSKQRK 435


>IMGA|Medtr3g077030.1 Frigida-like chr03_pseudomolecule_IMGAG_V3
           18036424-18040680 E EGN_Mt090430 20090702
          Length = 525

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 2/143 (1%)

Query: 66  LEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKVPELVQALGLAEMIPNFIKNLIKK 125
           L  + FL+ +  + + S F              + +  +L + +G  + +P  ++ L++K
Sbjct: 212 LGALGFLYLVYGFGIVSEFRGYVLVEFAARAAINGEFMQLCRDIGFTDKVPEIVQKLVEK 271

Query: 126 KQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKELQNENRNSTKVQIRAIDRELNALKA 185
            + ++AVK++F   + DK PPV ILK  +  S K L        K ++   DREL  LK 
Sbjct: 272 GKHVLAVKFVFEFSLADKIPPVPILKAAVDESRK-LARRRSEEGKRRMEITDRELRVLKR 330

Query: 186 VWKCIADYNIQGLSP-EVLEERI 207
           V + I  + ++   P + LE+RI
Sbjct: 331 VIEIIEIHKLESEYPRDSLEQRI 353


>IMGA|Medtr8g099150.1 Frigida-like chr08_pseudomolecule_IMGAG_V3
           21730398-21731834 E EGN_Mt090430 20090702
          Length = 272

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 102 VPELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSAKEL 161
            PEL +++GL   +P  I+ LI   + I AV ++    + + FPPV +L+ +L N  +  
Sbjct: 52  APELCRSIGLTHKVPALIEALINNGKHIAAVHFVQLFKLQESFPPVPLLRTYLKNQRRNS 111

Query: 162 QNENRNSTKVQIRAID---RELNALKAVWKCIADYNIQGLSP-EVLEERI 207
           Q +  N   +    ID   +EL AL+ V KCI +Y  +   P + L +R+
Sbjct: 112 QVKADNVRDIATAKIDANAQELAALRNVIKCIEEYEFESEYPLDTLHKRV 161


>IMGA|Medtr2g132680.1 Frigida-like chr02_pseudomolecule_IMGAG_V3
           32158387-32161241 E EGN_Mt090430 20090702
          Length = 525

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 116 PNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSNSA--KELQNENRNSTKVQI 173
            +F+++LI + Q + AVK+ FA D+ DK   V +L+ ++ N+    E   +  NS  ++ 
Sbjct: 421 ADFVEHLINRNQTVAAVKFSFAYDLDDKDHLVDMLRKYVKNAKLICESSCKKSNSIGIKD 480

Query: 174 RAIDRELNALKAVWKCIADYNIQ--GLSPEVLEERILYWKSIK 214
           +A D E+ +L  V +CI+D N++  GL    +E RIL  K+ K
Sbjct: 481 KARDEEIASLGTVLQCISDSNLESTGLLHADIEYRILELKAHK 523


>IMGA|Medtr2g132650.1 Frigida-like chr02_pseudomolecule_IMGAG_V3
           32139928-32143137 H EGN_Mt090430 20090702
          Length = 614

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%)

Query: 43  VKRRGKRICTLLGKKTGKNGMDPLEVICFLHFLAAYSLASTFTXXXXXXXXXXXXWHEKV 102
           VK    ++   L     +N  +   ++ FL  L+ Y L  +F              H+  
Sbjct: 437 VKEEAMKLALDLKANISQNTENSAAILGFLLLLSIYGLGPSFNEDDVLKLFGLVSQHDIA 496

Query: 103 PELVQALGLAEMIPNFIKNLIKKKQRIVAVKYIFALDMVDKFPPVSILKDHLSN 156
            EL  ALG A  I +F+++LIK++Q   AV++  A +  +    V I ++H+ N
Sbjct: 497 VELFGALGFANKISDFVQSLIKRQQYDEAVRFSCAYNFSNNTQLVDIFQEHVQN 550