Jatropha Genome Database

JcCB0372241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0372241.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g080430.1 Glycoside hydrolase, family 20; ; chr02_pse...   117   2e-27

>IMGA|Medtr2g080430.1 Glycoside hydrolase, family 20; ;
           chr02_pseudomolecule_IMGAG_V3 18523171-18526823 E
           EGN_Mt090430 20090702
          Length = 568

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 7/141 (4%)

Query: 1   AQTVYGALHGLQTFSQLCYFNFTTSMVEVPMVPWTIIDQPRFPYRGLLIDTSRHYLPLPV 60
           A T +GA+HGL+TFSQL + N T   V V      + D P F +RG+++DTSR+Y P+  
Sbjct: 124 AVTSWGAMHGLETFSQLAWGNPTRVAVNV-----RVNDAPLFGHRGIMLDTSRNYYPVKD 178

Query: 61  IEKVIDSMAYAKLNVLHWHIVDTQSFPLEIPSYPKL-WNGAYSISERYTFADAAEIVRQV 119
           + + I++M+  KLNV HWH+ D+ SFPL +PS P L   GAY +   YT  D   +V   
Sbjct: 179 LLRTIEAMSMNKLNVFHWHVTDSHSFPLILPSEPMLAEKGAYDVDMVYTVDDVKRVVEFG 238

Query: 120 VSAQGIHVLAEIDVPGHALSW 140
           +  +G+ V+ EID PGH  SW
Sbjct: 239 LD-RGVRVIPEIDAPGHTGSW 258