Jatropha Genome Database

JcCB0369541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369541.10 + phase: 0 /pseudo/partial
         (85 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023870.1 hypothetical protein chr01_pseudomolecule_I...    89   4e-19
IMGA|Medtr5g036020.1 hypothetical protein chr05_pseudomolecule_I...    64   2e-11

>IMGA|Medtr1g023870.1 hypothetical protein
          chr01_pseudomolecule_IMGAG_V3 5437009-5439642 E
          EGN_Mt090430 20090702
          Length = 321

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/63 (60%), Positives = 47/63 (74%)

Query: 1  MASGLPMLNCLLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSK 60
          M SGLP+L+ LLQHTLR            KWVYAVFWR++PR +PPP+W++GGT+LDRSK
Sbjct: 1  MESGLPLLHSLLQHTLRNLCSFPTSSTSSKWVYAVFWRVVPRIFPPPRWEFGGTSLDRSK 60

Query: 61 GTK 63
          G K
Sbjct: 61 GNK 63


>IMGA|Medtr5g036020.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 15018355-15016722 E
          EGN_Mt090430 20090702
          Length = 193

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 36/53 (67%), Gaps = 5/53 (9%)

Query: 11 LLQHTLRXXXXXXXXXXXXKWVYAVFWRILPRNYPPPKWDYGGTALDRSKGTK 63
          LLQHTLR            +WVYAVFWRILPRNYPPPKW+ G  A DRS+G +
Sbjct: 13 LLQHTLRSLCIHENS----QWVYAVFWRILPRNYPPPKWE-GQGAYDRSRGNR 60