Jatropha Genome Database

JcCB0369011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0369011.10 - phase: 0 /pseudo/partial
         (159 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g035800.1 Spermine synthase chr05_pseudomolecule_IMGA...   144   1e-35
IMGA|Medtr3g124370.1 Spermine synthase chr03_pseudomolecule_IMGA...   116   4e-27
IMGA|Medtr5g006230.1 Spermine synthase chr05_pseudomolecule_IMGA...    62   9e-11

>IMGA|Medtr5g035800.1 Spermine synthase
           chr05_pseudomolecule_IMGAG_V3 14833320-14838452 E
           EGN_Mt090430 20090702
          Length = 343

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 83/105 (79%)

Query: 55  PGWYADVSCGWPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEF 114
           PGW++++S  WPGEAH  KVEK+LF GKS+YQ++ VFQS+ +GK+++L+G +QLTE+DE 
Sbjct: 53  PGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSATYGKVLVLDGVIQLTERDEC 112

Query: 115 VYQEMLTHLPLCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
            YQEM+THLPLCSIPNPKKV           RE+SRH+SV +IDI
Sbjct: 113 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHASVEKIDI 157


>IMGA|Medtr3g124370.1 Spermine synthase
           chr03_pseudomolecule_IMGAG_V3 31515102-31520579 E
           EGN_Mt090430 20090702
          Length = 358

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 68/95 (71%)

Query: 65  WPGEAHLYKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLP 124
           WPGEAH  KVEK LF  KS YQ++ VF+S  +GK+++L+G +QLTEKDE  YQEM+ HLP
Sbjct: 77  WPGEAHSIKVEKKLFQEKSLYQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMIAHLP 136

Query: 125 LCSIPNPKKVXXXXXXXXXXXREISRHSSVNQIDI 159
           LCSIP+PK V           RE+SRHSSV  IDI
Sbjct: 137 LCSIPSPKNVLVVGGGDGGVLREVSRHSSVEHIDI 171


>IMGA|Medtr5g006230.1 Spermine synthase
           chr05_pseudomolecule_IMGAG_V3 612746-610087 E
           EGN_Mt090430 20090702
          Length = 328

 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%)

Query: 72  YKVEKVLFHGKSEYQDLFVFQSSAHGKIVILNGALQLTEKDEFVYQEMLTHLPLCSIPNP 131
           + +  +L  G S+YQD+ +  +   GK ++L+G LQ  E DEF+Y E L H  L   P P
Sbjct: 40  FALNSILHTGASQYQDIALLDTKPFGKALVLDGKLQSAETDEFIYHECLVHPALLHHPMP 99

Query: 132 KKVXXXXXXXXXXXREISRHSSVNQI 157
           K V           RE+ RH +++++
Sbjct: 100 KNVFIMGGGEGSTARELLRHKTIDKV 125