Jatropha Genome Database

JcCB0368291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.20 - phase: 0 
         (84 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g157370.1 hypothetical protein chr03_pseudomolecule_I...    96   3e-21
IMGA|Medtr1g117250.1 Major facilitator superfamily MFS_1 chr01_p...    48   1e-06
IMGA|Medtr1g117260.1 Major facilitator superfamily MFS_1 chr01_p...    47   3e-06
IMGA|Medtr1g117260.2 hypothetical protein chr01_pseudomolecule_I...    46   4e-06

>IMGA|Medtr3g157370.1 hypothetical protein
          chr03_pseudomolecule_IMGAG_V3 41477484-41479097 E
          EGN_Mt090430 20090702
          Length = 64

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 52/57 (91%), Gaps = 2/57 (3%)

Query: 1  MEKLS--GLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQA 55
          MEKL+  GLSHLFMT FLHN ST+MV PAITDVTM+A+CPG+DECS+AIYL+GFQQA
Sbjct: 1  MEKLNMYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQDECSIAIYLTGFQQA 57


>IMGA|Medtr1g117250.1 Major facilitator superfamily MFS_1
          chr01_pseudomolecule_IMGAG_V3 25074679-25071362 E
          EGN_Mt090430 20090702
          Length = 442

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 3  KLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          +L  L HL +   +H  +  M V  + DVT +A+CP +  CS AIY++G QQ +
Sbjct: 9  ELKPLFHLLLPLSIHWIAEAMTVSVLVDVTTTALCPQQSSCSKAIYINGLQQTI 62


>IMGA|Medtr1g117260.1 Major facilitator superfamily MFS_1
          chr01_pseudomolecule_IMGAG_V3 25081440-25077799 E
          EGN_Mt090430 20090702
          Length = 441

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 3  KLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAV 56
          +L  L HL +   +H  +  M V  + DVT +A+CP +  CS AIY++G Q+ +
Sbjct: 9  ELRPLFHLLLPLSIHWIAEEMTVSVLVDVTTTALCPQQSSCSKAIYINGLQETI 62


>IMGA|Medtr1g117260.2 hypothetical protein
          chr01_pseudomolecule_IMGAG_V3 25081440-25080140 E
          EGN_Mt090430 20090702
          Length = 178

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 3  KLSGLSHLFMTFFLHNFSTYMVVPAITDVTMSAICPGRDECSLAIYLSGFQQAVC 57
          +L  L HL +   +H  +  M V  + DVT +A+CP +  CS AIY++G Q+ + 
Sbjct: 9  ELRPLFHLLLPLSIHWIAEEMTVSVLVDVTTTALCPQQSSCSKAIYINGLQETIA 63