Jatropha Genome Database

JcCB0368291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0368291.10 - phase: 0 /pseudo/partial/short
         (47 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g157370.1 hypothetical protein chr03_pseudomolecule_I...    59   5e-10

>IMGA|Medtr3g157370.1 hypothetical protein
          chr03_pseudomolecule_IMGAG_V3 41477484-41479097 E
          EGN_Mt090430 20090702
          Length = 64

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 4  MERLSHLLLTFFLYNFSTFMVTPAMTDVTMSALCPGQ 40
          M  LSHL +T FL+N STFMV PA+TDVTM+ALCPGQ
Sbjct: 6  MYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQ 42