Jatropha Genome Database

JcCB0367641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367641.10 - phase: 0 /pseudo/partial
         (271 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g140450.1 early flowering 3, related chr03_pseudomole...    78   4e-15

>IMGA|Medtr3g140450.1 early flowering 3, related
           chr03_pseudomolecule_IMGAG_V3 36337998-36332692 E
           EGN_Mt090430 20090702
          Length = 688

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 90/186 (48%), Gaps = 20/186 (10%)

Query: 51  NLRLDTRNQ-------SEEKLEVCVSSRDHSVRSSTKFATRKKIASLGDAYQNQQNPDLP 103
           N R D RN+       S  K +   S+RD S   S+  + R+         QNQ+  D  
Sbjct: 166 NPRTDVRNEIDGPPQVSPNKEQPFTSARDTSNGESSNTSVRQ-----AKVIQNQEFQDRA 220

Query: 104 GANFSRFCENDDFLQQESTAFLQQDNSGNGEGVPELTREIEKGNIFCPRSDSLSREDCSS 163
               S   + D  L Q+  A  Q + +G  +   E TREI K N      D ++ +  +S
Sbjct: 221 VFKLSSSRQGDGCLHQDCRAESQSNGTGQRDASVESTREIGKSN------DPIANQ--TS 272

Query: 164 PNKPEIDCELSGEKTCRSLQFGNGDKSDDVSETSMVDSISALDISPDEVVGIIGQKHFWK 223
           P +     E     T   +  GN +K+D++S+ S V+ +S L ISPD+VV IIGQK FWK
Sbjct: 273 PTEAINGTEYHDTGTGSPIHSGNLNKNDNISKISRVEDLSTLKISPDDVVAIIGQKQFWK 332

Query: 224 ARRAIV 229
           AR+AI 
Sbjct: 333 ARKAIA 338