Jatropha Genome Database

JcCB0367281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0367281.10 - phase: 0 /pseudo/partial
         (120 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g106240.2 Transaldolase chr08_pseudomolecule_IMGAG_V3...    79   5e-16
IMGA|Medtr8g106240.1 Transaldolase chr08_pseudomolecule_IMGAG_V3...    79   5e-16

>IMGA|Medtr8g106240.2 Transaldolase chr08_pseudomolecule_IMGAG_V3
           23722355-23728046 E EGN_Mt090430 20090702
          Length = 399

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 51/67 (76%), Gaps = 6/67 (8%)

Query: 37  IFFKLQRSFPQIRASSGFSSSLDTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVS 96
           + F  + SF  IRASS      DT   TELDAVS+FSEIVPDTVIFDDF+KFPPTAATVS
Sbjct: 44  LLFNSKNSFSLIRASS-----TDT-VITELDAVSAFSEIVPDTVIFDDFQKFPPTAATVS 97

Query: 97  SSLLFGM 103
           SSL+ G+
Sbjct: 98  SSLILGI 104


>IMGA|Medtr8g106240.1 Transaldolase chr08_pseudomolecule_IMGAG_V3
           23722355-23728046 E EGN_Mt090430 20090702
          Length = 400

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 51/67 (76%), Gaps = 6/67 (8%)

Query: 37  IFFKLQRSFPQIRASSGFSSSLDTGASTELDAVSSFSEIVPDTVIFDDFEKFPPTAATVS 96
           + F  + SF  IRASS      DT   TELDAVS+FSEIVPDTVIFDDF+KFPPTAATVS
Sbjct: 44  LLFNSKNSFSLIRASS-----TDT-VITELDAVSAFSEIVPDTVIFDDFQKFPPTAATVS 97

Query: 97  SSLLFGM 103
           SSL+ G+
Sbjct: 98  SSLILGI 104