Jatropha Genome Database

JcCB0365891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365891.10 + phase: 2 /pseudo/partial
         (154 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g084310.1 hypothetical protein chr07_pseudomolecule_I...    48   3e-06

>IMGA|Medtr7g084310.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 18184753-18186767 E
           EGN_Mt090430 20090702
          Length = 242

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 29  KGVVNPATLRKRL----QKISRMLEKVGKAVAPTGEGESMSRMASLSEGPTLFKSPSKSW 84
           +G+ +P  LRK +     KISR L K    +AP+ + E+M+RM +++EGP + +SPS+S 
Sbjct: 169 QGISDPDLLRKVIITEASKISRDLGKSWNPMAPSIDVENMARMPAITEGPVVLRSPSRSH 228

Query: 85  KM 86
           K+
Sbjct: 229 KV 230