Jatropha Genome Database

JcCB0365841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365841.10 - phase: 0 /pseudo
         (116 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g136720.1 Zinc finger, RING-type; Cellulose synthase ...   162   3e-41
IMGA|Medtr8g145000.1 Zinc finger, RING-type; Cellulose synthase ...   144   1e-35
IMGA|Medtr8g073590.1 Zinc finger, RING-type; Cellulose synthase ...   134   2e-32
IMGA|Medtr3g009020.1 Cellulose synthase chr03_pseudomolecule_IMG...   133   2e-32
IMGA|Medtr4g141680.1 Zinc finger, RING-type; Cellulose synthase ...   126   3e-30
IMGA|Medtr1g124990.1 Zinc finger, RING-type; Cellulose synthase ...   124   1e-29
IMGA|Medtr3g029130.1 Zinc finger, RING-type; Cellulose synthase ...   119   5e-28
IMGA|Medtr4g089800.1 Cellulose synthase chr04_pseudomolecule_IMG...   101   8e-23
IMGA|Medtr4g089980.1 Cellulose synthase A catalytic subunit 4, p...    99   4e-22
IMGA|Medtr4g134990.1 Cellulose synthase chr04_pseudomolecule_IMG...    64   1e-11

>IMGA|Medtr3g136720.1 Zinc finger, RING-type; Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 34568485-34575037 E
          EGN_Mt090430 20090702
          Length = 1087

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 83/94 (88%), Gaps = 1/94 (1%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDS-DSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACN 59
          MEAS+GMVAGS+ RNELVRIRHDS DSGPKPLKNLNGQ C ICG++VG T +GD FVACN
Sbjct: 1  MEASSGMVAGSHNRNELVRIRHDSADSGPKPLKNLNGQVCHICGEDVGTTPTGDVFVACN 60

Query: 60 ECAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          EC +PVCR CYEYERK+G +SCPQCKTRY+R +G
Sbjct: 61 ECGYPVCRDCYEYERKEGNKSCPQCKTRYKRLRG 94


>IMGA|Medtr8g145000.1 Zinc finger, RING-type; Cellulose synthase
          chr08_pseudomolecule_IMGAG_V3 35160848-35155901 E
          EGN_Mt090430 20090702
          Length = 1038

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEASAG+VAGS+ RNELV I    +   KPLKNL+GQ C+ICGD+VG+T  GD FVACNE
Sbjct: 1  MEASAGLVAGSHNRNELVVIHGHEEH--KPLKNLDGQVCEICGDDVGLTVDGDLFVACNE 58

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          C FPVCRPCYEYER++G Q CPQCKTRY+R KG
Sbjct: 59 CGFPVCRPCYEYERREGRQLCPQCKTRYKRLKG 91


>IMGA|Medtr8g073590.1 Zinc finger, RING-type; Cellulose synthase
          chr08_pseudomolecule_IMGAG_V3 14394817-14400736 E
          EGN_Mt090430 20090702
          Length = 981

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 73/93 (78%), Gaps = 2/93 (2%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          MEA +G+ AGS   NELV I+  ++  PK +KNL+GQ C+ICGD+VG T  GD FVAC E
Sbjct: 1  MEAKSGLFAGSLNSNELVVIQKQNE--PKAVKNLDGQDCEICGDSVGRTVEGDLFVACEE 58

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          C FPVCRPCYEYERK+G+Q+CPQC TRY+R KG
Sbjct: 59 CGFPVCRPCYEYERKEGSQNCPQCHTRYKRIKG 91


>IMGA|Medtr3g009020.1 Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 1240220-1233020 E
          EGN_Mt090430 20090702
          Length = 1048

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 72/93 (77%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          ME + G+VAGS+ +NE + IR D D     L+ L+G TCQ+CG+++GV A GD FVACNE
Sbjct: 1  METNFGLVAGSHNKNEFIIIRQDGDYARTDLQELDGDTCQLCGEDIGVNADGDPFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCR CYEYER++G Q CPQCKT+++R KG
Sbjct: 61 CAFPVCRNCYEYERREGNQVCPQCKTKFKRLKG 93


>IMGA|Medtr4g141680.1 Zinc finger, RING-type; Cellulose synthase
          chr04_pseudomolecule_IMGAG_V3 35036331-35029774 E
          EGN_Mt090430 20090702
          Length = 1098

 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNE 60
          M     ++AGS+ RNE V I  + +   K ++ L+GQ C ICGD + VT  G+ FVACNE
Sbjct: 1  MHTGGRLIAGSHNRNEFVLINAEENGRIKSVRELSGQICMICGDEIEVTVDGEPFVACNE 60

Query: 61 CAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          CAFPVCRPCYEYERK+G Q+CPQCKTRY+R KG
Sbjct: 61 CAFPVCRPCYEYERKEGNQACPQCKTRYKRLKG 93


>IMGA|Medtr1g124990.1 Zinc finger, RING-type; Cellulose synthase
          chr01_pseudomolecule_IMGAG_V3 27423658-27418351 E
          EGN_Mt090430 20090702
          Length = 1135

 Score =  124 bits (310), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/95 (54%), Positives = 66/95 (69%), Gaps = 2/95 (2%)

Query: 1  MEASAGMVAGSYRRNELVRIRHDSDS--GPKPLKNLNGQTCQICGDNVGVTASGDTFVAC 58
          M+ +  +VAGS+ RNE V I  D  +      +  L+GQ CQICGD +  T   + FVAC
Sbjct: 1  MDTNGRLVAGSHNRNEFVLINADDTARVSVNAVTELSGQICQICGDEIEFTVDDEPFVAC 60

Query: 59 NECAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          NECAFPVCRPCYEYER++G Q+CP CKT+Y+R KG
Sbjct: 61 NECAFPVCRPCYEYERREGNQACPHCKTKYKRIKG 95


>IMGA|Medtr3g029130.1 Zinc finger, RING-type; Cellulose synthase
          chr03_pseudomolecule_IMGAG_V3 7596650-7605565 E
          EGN_Mt090430 20090702
          Length = 1078

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query: 23 DSDSGPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCP 82
          + ++G KP+K L  + CQICGDN+G   +GD F+AC  CAFPVCRPCYEYERKDG QSCP
Sbjct: 5  EGEAGDKPMKTLGSKVCQICGDNIGSAVNGDPFIACGVCAFPVCRPCYEYERKDGNQSCP 64

Query: 83 QCKTRYRRHKG 93
          QCKTRY +HKG
Sbjct: 65 QCKTRYNKHKG 75


>IMGA|Medtr4g089800.1 Cellulose synthase
          chr04_pseudomolecule_IMGAG_V3 18805888-18800122 E
          EGN_Mt090430 20090702
          Length = 1039

 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 6/90 (6%)

Query: 5  AGMVAGSYRRNELVRIRHDSDS-GPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAF 63
          AG++ GS          HDSD   P P    + + C++CGD +G   +G+ FVAC+ CAF
Sbjct: 2  AGLITGSNSH-----FSHDSDEHKPPPANKSSSKICRVCGDEIGYKENGELFVACHVCAF 56

Query: 64 PVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          PVC+PCYEYER +G Q CPQC +RY+RHKG
Sbjct: 57 PVCKPCYEYERSEGNQCCPQCNSRYKRHKG 86


>IMGA|Medtr4g089980.1 Cellulose synthase A catalytic subunit 4,
          putative chr04_pseudomolecule_IMGAG_V3
          18885025-18883512 E EGN_Mt090430 20090702
          Length = 244

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 6/90 (6%)

Query: 5  AGMVAGSYRRNELVRIRHDSDS-GPKPLKNLNGQTCQICGDNVGVTASGDTFVACNECAF 63
          AG++ GS          HDSD   P P    + + C++CGD +G   +G+ FVAC+ CAF
Sbjct: 2  AGLITGSN-----SHFSHDSDEHKPPPANKSSSKICRVCGDEIGYKENGELFVACHVCAF 56

Query: 64 PVCRPCYEYERKDGTQSCPQCKTRYRRHKG 93
          PVC+PCYEYER +G Q CPQC +RY+RHKG
Sbjct: 57 PVCKPCYEYERSEGNQCCPQCNSRYKRHKG 86


>IMGA|Medtr4g134990.1 Cellulose synthase
          chr04_pseudomolecule_IMGAG_V3 32654448-32648144 E
          EGN_Mt090430 20090702
          Length = 991

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 37/50 (74%)

Query: 39 CQICGDNVGVTASGDTFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88
          C ICG+ + ++ +G+ FVAC+EC++P+C+ C+E+E  +G + C +C T Y
Sbjct: 9  CNICGEQLVLSENGELFVACHECSYPICKACFEHEINEGHKVCLKCGTPY 58