Jatropha Genome Database

JcCB0365731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0365731.10 + phase: 0 /partial
         (53 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g105940.1 Light chain 3 (LC3) chr08_pseudomolecule_IM...    80   3e-16
IMGA|Medtr8g134240.1 Light chain 3 (LC3) chr08_pseudomolecule_IM...    55   9e-09
IMGA|Medtr2g104190.1 Light chain 3 (LC3) chr02_pseudomolecule_IM...    54   2e-08
IMGA|Medtr1g106030.1 Light chain 3 (LC3) chr01_pseudomolecule_IM...    50   3e-07

>IMGA|Medtr8g105940.1 Light chain 3 (LC3)
          chr08_pseudomolecule_IMGAG_V3 23520062-23522856 E
          EGN_Mt090430 20090702
          Length = 122

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 44/49 (89%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA S FK EH LE+R+AE+ARIREKYPDRIPVIVE+AERSDIP IDKKK
Sbjct: 1  MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKK 49


>IMGA|Medtr8g134240.1 Light chain 3 (LC3)
          chr08_pseudomolecule_IMGAG_V3 32243783-32246370 E
          EGN_Mt090430 20090702
          Length = 118

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 7  SSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          +SFK E  L+ R+ ES  I  KYPDRIPVI+E+  R+D+P++DKKK
Sbjct: 5  NSFKQEFSLDERRKESQSIIVKYPDRIPVIIEKYSRTDLPELDKKK 50


>IMGA|Medtr2g104190.1 Light chain 3 (LC3)
          chr02_pseudomolecule_IMGAG_V3 24505007-24508014 E
          EGN_Mt090430 20090702
          Length = 112

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 34/49 (69%), Gaps = 8/49 (16%)

Query: 4  MANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
          MA SSFK EHPL R    S  I      RIPVIVERAE+SD+PDIDKKK
Sbjct: 1  MAKSSFKLEHPLGR----SIPIEF----RIPVIVERAEKSDVPDIDKKK 41


>IMGA|Medtr1g106030.1 Light chain 3 (LC3)
          chr01_pseudomolecule_IMGAG_V3 21999606-22000729 F
          EGN_Mt090430 20090702
          Length = 121

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query: 5  ANSSFKFEHPLERRQAESARIREKYPDRIPVIVERAERSDIPDIDKKK 52
            S F+ E   E+R  ES  I  KYPDRIPVIVE+  + D+P ++KKK
Sbjct: 3  GGSYFQNEFTFEQRLEESRDIIAKYPDRIPVIVEKYTKCDLPHLEKKK 50