Jatropha Genome Database

JcCB0364041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0364041.10 + phase: 0 /partial
         (155 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g020580.1 Protein of unknown function DUF829, eukaryo...   117   2e-27

>IMGA|Medtr5g020580.1 Protein of unknown function DUF829, eukaryotic
           chr05_pseudomolecule_IMGAG_V3 7789506-7785127 E
           EGN_Mt090430 20090702
          Length = 405

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 13/151 (8%)

Query: 1   VWASGFSAAFLKKNSVATRVHMSSSDVEVFVGGKKFVEP-----KPAATEAALLVILEKF 55
           VWA+GF+ A L+K S       SS+   V VG K   E      +P+  E  +L +LEK 
Sbjct: 244 VWAAGFATAILQKRS-------SSTQALVDVGNKPKSETTIQQNEPSIVEIVVLSLLEKI 296

Query: 56  FEVVLNFPXXXXXXXXXXXXXXXXQPTCPQLYIYSTADRVIPAKSVESFIQEQRRAGHEV 115
           F  +L  P                QP CPQLY+YSTAD+VIP +S+E FI+EQR+ G  V
Sbjct: 297 FSFLLQLPESDRRLRKVFNPLAEHQP-CPQLYLYSTADKVIPFRSIEVFIEEQRKIGKRV 355

Query: 116 RACNFVSSPHVDHFRNDPNLYSTQLSQFLDD 146
           ++ NF SSPHVDH+RN P++Y  Q+++FL++
Sbjct: 356 KSYNFGSSPHVDHYRNFPDVYLLQVTEFLNE 386