Jatropha Genome Database
- JcCB0362691.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0362691.10 - phase: 1 /TE/partial
(648 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 97 2e-20
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 81 1e-15
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 79 1e-14
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 79 1e-14
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 73 4e-13
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 70 3e-12
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 70 4e-12
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 69 6e-12
IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo... 63 3e-10
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 63 4e-10
IMGA|Medtr1g102740.1 gag-pol polyprotein, related chr01_pseudomo... 62 6e-10
IMGA|Medtr1g102780.1 gag-pol polyprotein, related chr01_pseudomo... 62 1e-09
IMGA|Medtr5g046390.1 gag-pol polyprotein, related chr05_pseudomo... 62 1e-09
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 60 3e-09
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 57 4e-08
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 55 8e-08
IMGA|Medtr6g086660.1 gag-pol polyprotein, related chr06_pseudomo... 55 1e-07
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 53 5e-07
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 51 2e-06
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 50 2e-06
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 50 2e-06
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 159/372 (42%), Gaps = 55/372 (14%)
Query: 292 QSECRTNLNKDGGRQSXFAEKEEESEITLLMACQASNQTEEDTKQNIWYLDTGCSNHMSG 351
+++C N+ K S F K L+A S Q + W +DTG ++H
Sbjct: 363 ETKCSANVVKGSNSISLFESKS-------LLASFDSKQNDPG-----WIVDTGATHHTCY 410
Query: 352 NKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNVIYVPNLNINLPNI 411
+ + F+ + + +V N S + GQ ++ ++++ I NV+Y+P +NL ++
Sbjct: 411 DLNWFTSYSKIETINVNLPNGSVIEACYIGQ--VKLSKDLS--IDNVLYLPKFAVNLISV 466
Query: 412 GQL-QEKGYEIQIKNGVCQLLDDN----LGLIAE----------------VKMIANRMFP 450
+L +E+ +++ + +C + + N +GL E V I+ ++
Sbjct: 467 SKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETDERNKVSVSNISAQV-E 525
Query: 451 LHLNHVILSCFFVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCV 510
LH HV + LWH R HL+ + M + + + P C+ C
Sbjct: 526 LHQKHV----------PDGVLWHLRLGHLSHDRMICMNKMYSYVPVS----PHTACDVCQ 571
Query: 511 MSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTRKIWVYFLQ 570
M +Q FP S+ AK +LVH DI GP + S G +Y +T +DD TR +W+ L+
Sbjct: 572 MCRQKILPFPIS-SRNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLK 630
Query: 571 ENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTAAYSPQQ 630
E + K+ G + + +F + GI Q + Y+PQQ
Sbjct: 631 NKSEASYQVKNFVSMVERQFERKIKMIRSDNGPEFM--LREFYDKKGIIHQRSCVYTPQQ 688
Query: 631 NGSCERKIDTII 642
NG ER+ I+
Sbjct: 689 NGRVERRHQHIL 700
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 130/333 (39%), Gaps = 37/333 (11%)
Query: 315 ESEITLLMACQASNQTEEDTKQNIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSR 374
+S I+ + +C ++K ++W+LD+G + H+ N F+ F + V N S
Sbjct: 361 QSGISSIFSCSI------NSKSDVWFLDSGANEHIVNNTHWFTSFHKINPRPVNLPNGSS 414
Query: 375 VSIMGKGQXXIQTRRNVTXKISNVIYVPNLNINLPNIGQL--QEKGYEIQIKNGVCQLLD 432
V + G R + NV+Y P+ +NL +I ++ Y I N C L D
Sbjct: 415 VLVEYAG----TIRFTPQFYLENVLYSPSFTLNLISIFKVCSSLNCYAI-FHNKQCLLQD 469
Query: 433 DNLGLIAEVKMIANRMFPLHLNHVILSCFFVKQGDEAWLWHFRYRHLNFGGLKTMQQKNM 492
+ KMI L F + LWHFR H++ L M Q
Sbjct: 470 -----LHSQKMIG------------LGEQFGVYYSYSALWHFRLGHVSPKRLIHMSQLYP 512
Query: 493 VIGLPQISPPSQTCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRY 552
+ + TC+ C +KQ + F S A EL+H DI GP++ S RY
Sbjct: 513 TLTVDV----HATCDICHFAKQKKLPFSNSISV-ASIKFELLHFDIWGPLSITSIHNHRY 567
Query: 553 VITFIDDNTRKIWVYFLQENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKF 612
+T +DD +R +W+ L+ + K G L + F
Sbjct: 568 FLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFL--LHSF 625
Query: 613 CELHGIKRQLTAAYSPQQNGSCERKIDTIIEYG 645
GI + +PQQNG ERK I+ G
Sbjct: 626 YASKGIVHHRSCVETPQQNGRVERKHQHILNVG 658
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 133/339 (39%), Gaps = 43/339 (12%)
Query: 339 WYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNV 398
W +D+G ++H+ +K+ F+ F + V N + + + G ++T +V
Sbjct: 351 WIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAGNVHFTPYLHLT----HV 406
Query: 399 IYVPNLNINLPNIGQLQEK--------GYEIQIKNGVCQ----LLDDNLGLIAEVKMIAN 446
+Y P +NL ++ ++ + + I++ Q L D + GL N
Sbjct: 407 LYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKLSMHFVN 466
Query: 447 RMFPLH------LNHVILSC--------------FFVKQGDEAWLWHFRYRHLNFGGLKT 486
+ LH N V S F+ + E+ LWHFR HL+ L T
Sbjct: 467 QQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHLSNQRLST 526
Query: 487 MQQKNMVIGLPQISPPSQTCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCS 546
M + I I C+ C ++ + FP S A + +L+H DI GP+
Sbjct: 527 MSRLYPSI----IVDNKAACDICHFARHKKLPFPHSSS-HANSKFQLLHFDIWGPLAINY 581
Query: 547 NGGKRYVITFIDDNTRKIWVYFLQENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXL 606
G +Y +T +DD+TR +W+ L+ + K+ G L
Sbjct: 582 VHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNGSEFL 641
Query: 607 TXICKFCELHGIKRQLTAAYSPQQNGSCERKIDTIIEYG 645
+ F GI Q + +PQQNG ERK I+ G
Sbjct: 642 --LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIG 678
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 133/339 (39%), Gaps = 43/339 (12%)
Query: 339 WYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNV 398
W +D+G ++H+ +K+ F+ F + V N + + + G ++T +V
Sbjct: 351 WIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAGNVHFTPYLHLT----HV 406
Query: 399 IYVPNLNINLPNIGQLQEK--------GYEIQIKNGVCQ----LLDDNLGLIAEVKMIAN 446
+Y P +NL ++ ++ + + I++ Q L D + GL N
Sbjct: 407 LYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKLSMHFVN 466
Query: 447 RMFPLH------LNHVILSC--------------FFVKQGDEAWLWHFRYRHLNFGGLKT 486
+ LH N V S F+ + E+ LWHFR HL+ L T
Sbjct: 467 QQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHLSNQRLST 526
Query: 487 MQQKNMVIGLPQISPPSQTCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCS 546
M + I I C+ C ++ + FP S A + +L+H DI GP+
Sbjct: 527 MSRLYPSI----IVDNKAACDICHFARHKKLPFPHSSS-HANSKFQLLHFDIWGPLAINY 581
Query: 547 NGGKRYVITFIDDNTRKIWVYFLQENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXL 606
G +Y +T +DD+TR +W+ L+ + K+ G L
Sbjct: 582 VHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNGSEFL 641
Query: 607 TXICKFCELHGIKRQLTAAYSPQQNGSCERKIDTIIEYG 645
+ F GI Q + +PQQNG ERK I+ G
Sbjct: 642 --LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIG 678
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 107/433 (24%), Positives = 165/433 (38%), Gaps = 70/433 (16%)
Query: 261 QERGRDDDHSKPKFVDKSKVECYRCHRYGH-----YQSECRTNLNK------DGGRQSXF 309
Q RGR + +S K C C R GH Y+ R +L+ + + F
Sbjct: 215 QGRGRGNGNSN----SNGKRSCSFCGRDGHTIDICYRKHEREDLDDSKSCKGNSNTEPSF 270
Query: 310 AEKEEESE--ITLLMACQASNQ--------------------TEEDTKQNIWYLDTGCSN 347
+E+ E +TLL + QAS+ T + W +D+G S+
Sbjct: 271 GITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRISYTMNHSSFGTWIVDSGASD 330
Query: 348 HMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNVIYVPNLNIN 407
H+ + F + +K N + + K + + + NV+YV +N
Sbjct: 331 HICSSIKNFDSYAPIIPVHIKLPNGNMA--IAKFSGTVTFSPGLIAR--NVLYVAEFKLN 386
Query: 408 LPNIGQL-QEKGYEIQIKNGVCQLLD-DNLGLIAEVKMIANRMFPLHLNHVILSCF---- 461
L ++ +L + + N C + D NL + ++I F L+L + S F
Sbjct: 387 LLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYF-LNLGSQVFSQFNHQP 445
Query: 462 ------------FVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDC 509
F+ Q EA LWHFR HL+ L MQQ I + S C+ C
Sbjct: 446 VIASSQASSSTTFLPQ--EA-LWHFRLGHLSNDRLLRMQQHFPCIKVDSNS----VCDIC 498
Query: 510 VMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTRKIWVYFL 569
S+ + F +K A EL+H DI GPI+ S G +Y IT +DD +R W+
Sbjct: 499 HYSRHKKLPFKLSMNK-ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLC 557
Query: 570 QENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTAAYSPQ 629
+ + K G L + F GI+ Q + +PQ
Sbjct: 558 KTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL--MPDFYSSKGIEHQTSCVETPQ 615
Query: 630 QNGSCERKIDTII 642
QNG ERK I+
Sbjct: 616 QNGRVERKHQHIL 628
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 115/312 (36%), Gaps = 28/312 (8%)
Query: 334 TKQNIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTX 393
+K W LD+G + H+ N S F+ V N + + + G
Sbjct: 378 SKPYYWLLDSGANEHICSNLSFFTSLHRIKPVRVNLPNKTSIIVHFAG------------ 425
Query: 394 KISNVIYVPNLNINLPNIGQLQEKGYEIQIKNGVCQLLDDNLGLIAEVKMIANRMFPLHL 453
NV++ P + + L+ G Q+ G+ + + + N+
Sbjct: 426 ---NVVFTPQFYLT-NDQTSLKMIGLAKQVA-GLYRYTPPSDFSSTSLMHSPNKS----C 476
Query: 454 NHVILSCFFVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCVMSK 513
N +SC A LWHFR HL+ + M I + C+ C SK
Sbjct: 477 NFSSISCNSNNCIPVAALWHFRLGHLSNQRMIKMSHLYPSI----VHNNRDVCDICHFSK 532
Query: 514 QHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTRKIWVYFLQENX 573
Q F S A EL+H DI GPI+ S G RY +T +DD++R +W+ L+
Sbjct: 533 QKHLPFSSSLS-HASTNFELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKS 591
Query: 574 XXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTAAYSPQQNGS 633
V K G L + F HGI Q + +PQQNG
Sbjct: 592 EVSLHVKNFILMIRTQFHVTPKYVRSDNGPEFL--LNDFYSSHGIIHQKSCVETPQQNGR 649
Query: 634 CERKIDTIIEYG 645
ERK I+ G
Sbjct: 650 VERKHQHILNVG 661
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 128/322 (39%), Gaps = 33/322 (10%)
Query: 339 WYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNV 398
W +D+G S+H+ + F + +K N + + K + + + NV
Sbjct: 392 WIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMA--IAKFSGTVNFSPGLIAR--NV 447
Query: 399 IYVPNLNINLPNIGQL-QEKGYEIQIKNGVCQLLD-DNLGLIAEVKMIANRMFPLHLNHV 456
+YV +NL ++ +L + + N C + D NL + ++I F L+L
Sbjct: 448 LYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYF-LNLGSQ 506
Query: 457 ILSCF----------------FVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQIS 500
+ S F F+ Q EA LWHFR HL+ L MQQ I + S
Sbjct: 507 VFSQFNHQPVIALSQSSSSTTFLPQ--EA-LWHFRLGHLSNDRLLRMQQHFPCIKVDSNS 563
Query: 501 PPSQTCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDN 560
C+ C S+ + F +K A EL+H DI GPI+ S G +Y IT +DD
Sbjct: 564 ----VCDICHYSRHKKLPFKLSMNK-ASHCYELIHFDIWGPISTHSIHGHKYFITALDDY 618
Query: 561 TRKIWVYFLQENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKR 620
+R W+ + + K G L + F GI+
Sbjct: 619 SRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL--MPDFYSSKGIEH 676
Query: 621 QLTAAYSPQQNGSCERKIDTII 642
Q + +PQQNG ERK I+
Sbjct: 677 QTSCVETPQQNGRVERKHQHIL 698
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 492 MVIGLPQISPPSQTCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKR 551
MVIG + ++C C++ K R++F RAK VL +VHSDI GPI + G R
Sbjct: 1 MVIGELNVKIVEKSCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNR 60
Query: 552 YVITFIDDNTRKIWVYFLQ 570
Y ITF+D+ ++ +W+Y ++
Sbjct: 61 YFITFVDEYSKMLWLYLIK 79
>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
EGN_Mt090430 20090702
Length = 183
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 339 WYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNV 398
W +D+GC++HM+ ++ F +++ V+ N + + + G G +++ +ISNV
Sbjct: 13 WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSHSGYK-QISNV 71
Query: 399 IYVPNLNINLPNIGQLQEKGYEIQIKNGVCQLLDDNLGLIAEVKMIANRMFPLHL 453
+Y P LN +L ++ QL KGY++ ++ C + D N + +M A R F L L
Sbjct: 72 LYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVLRAQMKA-RKFVLDL 125
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 117/314 (37%), Gaps = 47/314 (14%)
Query: 337 NIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKIS 396
++W+LD+G + H+ + F+ F + V N + V + G I
Sbjct: 379 DVWFLDSGANEHIVSSTHWFTSFHKINPKPVNLPNGTSVLVEYAGTIHFTPHF----YIE 434
Query: 397 NVIYVPNLNINLPNIGQLQEKGY-EIQIKNGVCQLLDDN----LGLIAEVKMIANRMFPL 451
+V+Y P+ +NL +I ++ + + C L D + +GL +V+ + +
Sbjct: 435 DVLYSPSFTLNLISIFKVCSSLHCYASFHDKKCFLQDLHSQKMIGLGEQVRGLLGHVSNK 494
Query: 452 HLNHVILSCFFVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCVM 511
LNH+ HL T+ N TC+ C
Sbjct: 495 RLNHM--------------------SHL----YPTLTVDNHA-----------TCDICQF 519
Query: 512 SKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTRKIWVYFLQE 571
+KQ + SFP S A + EL+H DI GP+ S RY +T +DD + W+ L+
Sbjct: 520 AKQKKLSFPTSVSV-ASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKS 578
Query: 572 NXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTAAYSPQQN 631
+ K+ G L + F GI + +PQQN
Sbjct: 579 KYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFL--LNSFYASKGIVHHKSCVETPQQN 636
Query: 632 GSCERKIDTIIEYG 645
G ERK I+ G
Sbjct: 637 GRVERKHQHILNVG 650
>IMGA|Medtr1g102740.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 21153367-21155226 E
EGN_Mt090430 20090702
Length = 234
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 334 TKQNIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTX 393
T N W +D+GC+ H + +++ F +T N + + I G G I++R V
Sbjct: 8 TPSNFWVVDSGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKL 67
Query: 394 KISNVIYVPNLNINLPNIGQLQEKGYEIQIKNGVCQLLDDNLGLIAEVKMIANRMFPL 451
++NV Y+P +L ++ L E+GY++ K C + D N I E++M ++F L
Sbjct: 68 ILNNVNYIPENCYSLLSVAGLLEEGYQVLFKRNKCLIKDQNNKFI-EIRMKCRKLFVL 124
>IMGA|Medtr1g102780.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 21184395-21181931 E
EGN_Mt090430 20090702
Length = 311
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 334 TKQNIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTX 393
T N W +++GC+ H + +++ F +T N + + I G G I++R V
Sbjct: 31 TPSNFWVVESGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKL 90
Query: 394 KISNVIYVPNLNINLPNIGQLQEKGYEIQIKNGVCQLLDDNLGLIAEVKMIANRMFPL 451
++NV Y+P +L ++ L E+GY++ K C + D N I E++M ++F L
Sbjct: 91 ILNNVNYIPENCYSLLSVAGLLEEGYQVLFKRNKCLIKDQNNKFI-EIRMKCRKLFVL 147
>IMGA|Medtr5g046390.1 gag-pol polyprotein, related
chr05_pseudomolecule_IMGAG_V3 19508075-19507539 H
EGN_Mt090430 20090702
Length = 178
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 332 EDTKQNIWYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNV 391
E +K ++W +D+G +N+++ ++ F+ D++Y ++ N + ++ G G +
Sbjct: 5 ETSKPSLWLIDSGATNNLTCDREVFTELDKSYSSVIRVANGAEITSEGIGTIVFKNHSG- 63
Query: 392 TXKISNVIYVPNLNINLPNIGQLQEKGYEIQIKNGVCQLLDDNLGLIAEVKMIANRMF 449
+ + NV+YVP ++ NL ++ QL + GY++ ++ C + D N + +++M NR +
Sbjct: 64 SKLVLNVLYVPQISENLLSVPQLLKNGYKVLFEHESCMINDQNNEEVFKIQMKKNRFY 121
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 119/309 (38%), Gaps = 38/309 (12%)
Query: 339 WYLDTGCSNHMSGNKSAFSIFDETYRDSVKFGNNSRVSIMGKGQXXIQTRRNVTXKISNV 398
W +D+G + H+ + + F+ + V + S V++ G + +T NV
Sbjct: 362 WLVDSGANEHICRDLNLFTSYHAISPSIVTLPDGSIVTVTHAGYINFSPQFYLT----NV 417
Query: 399 IYVPNLNINLPNIGQLQEK-GYEIQIKNGVCQLLDDNLGLIAEVKMIANRMFPLHLNHVI 457
+Y + +NL ++ ++ E Q C + D +KMI
Sbjct: 418 LYSSSFRLNLMSVHKVCESLSCTFQFLPNQCIIQDS-----TSLKMIG------------ 460
Query: 458 LSCFFVKQGDEAW-LWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCVMSKQHR 516
Q D + L H ++ +N + + N+V + C+ C +KQ
Sbjct: 461 ----LANQQDGLYKLGHLSHQRMN---MMSSLYSNIVSD-----NKNSVCDICHFAKQKH 508
Query: 517 NSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTRKIWVYFLQENXXXX 576
F S A + EL+H DI GP++ S G +Y +T +DD++R +W+ L+
Sbjct: 509 LPFSISTS-HATSNFELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVS 567
Query: 577 XXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTAAYSPQQNGSCER 636
V K G L I F E GI Q + +PQQNG ER
Sbjct: 568 HHVKSFIKMVQTQFHVTPKCIRSDNGPEFL--ILSFYESLGILHQKSCVETPQQNGRVER 625
Query: 637 KIDTIIEYG 645
K I+ G
Sbjct: 626 KHHHILNVG 634
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 457 ILSCFFVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCVMSKQHR 516
+++ F + Q D LWH R H++ G++ + + N++ G +I P + E K+HR
Sbjct: 89 VVASFEIDQEDMTKLWHMRLGHMSERGMQILAKDNLLYG-HKIKDPGLS-EHYAFGKRHR 146
Query: 517 NSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTR 562
N F + R K L+ +H D P S GG +Y ++ IDD +R
Sbjct: 147 NKFLK-VIHRTKGTLDYIHDDCWEPSRVESLGGHKYFLSLIDDYSR 191
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 471 LWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQ-TCEDCVMSKQHRNSFPQGKSKRAKA 529
LWHFR HL+ L M P I ++ C+ C +KQ + + + A +
Sbjct: 444 LWHFRLGHLSNQRLSQMHHL-----YPDIHVDNKFICDICHFAKQRKLPY-NSSTSIASS 497
Query: 530 VLELVHSDICGPITPCSNGGKRYVITFIDDNTRKIWVYFLQENXXXXXXXXXXXXXXXXX 589
EL++ DI GP+ S G+RY +T +DD++R +W +
Sbjct: 498 NFELLYLDIWGPLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNK 557
Query: 590 XEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTAAYSPQQNGSCERKIDTII 642
+V K+ G + L + F GI Q + +PQ N ++ T++
Sbjct: 558 HKVTPKIIRSDNGHVFL--LSAFYASQGIIHQRSCVETPQHNVFLINRVPTLV 608
>IMGA|Medtr6g086660.1 gag-pol polyprotein, related
chr06_pseudomolecule_IMGAG_V3 17762174-17761410 H
EGN_Mt090430 20090702
Length = 254
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 337 NIWYLDTGCSNHMSGNKSAFSIFDETYRD-SVKFGNNSRVSIMGKGQXXIQTRRNVTXKI 395
N WY+D+G ++HM+ ++S F ++T ++ GN + + + G G I+ + I
Sbjct: 11 NFWYIDSGATHHMTYDRSLFKELNKTIISCNIIVGNGAPIEVEGFGTVTIKHHSGLK-LI 69
Query: 396 SNVIYVPNLNINLPNIGQLQEKGYEIQIKNGVCQLLDDNLGLIAEVKM 443
NV YVP L +L ++ QL E+GY + + C++ N + +++M
Sbjct: 70 LNVFYVPKLTSSLLSVPQLLEEGYHVFFIHNSCEIKHQNNKEVIKIQM 117
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 116/325 (35%), Gaps = 58/325 (17%)
Query: 339 WYLDTGCSNHMSGNKSAFSIFDETYRDS---VKFGNNSRVSIMGKGQXXIQTRRNVTXKI 395
W +D+G + H+ S+ +F YR V N S V + G ++T
Sbjct: 389 WLIDSGANEHIC---SSLHLFHSYYRIKPICVNLPNGSSVIVQYAGTVVFSPHFHIT--- 442
Query: 396 SNVIYVPNLNINLPNIGQL-QEKGYEIQIKNGVCQLLDDNLGLIAEVKMIANRMFPLHL- 453
+V+Y P+ + L ++ ++ Q Y + + D + + + + ++ LH
Sbjct: 443 -HVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLCDGLYRLHPF 501
Query: 454 ------NHVILSCF---------------FVKQGDEAWLWHFRYRHLNFGGLKTMQQKNM 492
H I S V +WHFR HL+ L M
Sbjct: 502 APASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQRLSMMHSLYS 561
Query: 493 VIGLPQISPPSQTCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRY 552
I T ++ S A + EL+H DI GP++ S G +Y
Sbjct: 562 SI----------TIDNKAYSI-------------ASSKFELLHFDIWGPLSVTSVHGHKY 598
Query: 553 VITFIDDNTRKIWVYFLQENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKF 612
+T +DD +R +WV L+ ++ K G L I +F
Sbjct: 599 FLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDNGPEFL--IPEF 656
Query: 613 CELHGIKRQLTAAYSPQQNGSCERK 637
GI Q + +PQQNG ERK
Sbjct: 657 YASKGIIHQKSCVETPQQNGRVERK 681
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 505 TCEDCVMSKQHRNSFPQGKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDNTRKI 564
C+ C ++ + F S + +L+H DI GP+ S G +Y +T +DD+TR +
Sbjct: 15 ACDVCHFARHKKLPFSHSSSHASSK-FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFL 73
Query: 565 WVYFLQENXXXXXXXXXXXXXXXXXXEVQXKLFEQTVGXIXLTXICKFCELHGIKRQLTA 624
W+ L+ V K+ G L + +F GI Q +
Sbjct: 74 WIILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEFL--LHEFYASKGILHQSSC 131
Query: 625 AYSPQQNGSCERKIDTIIEYG 645
+PQQNG ERK I+ G
Sbjct: 132 VETPQQNGRVERKHQHILNIG 152
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 462 FVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCVMSKQHRNSFPQ 521
V+ ++ LWH R H+ + + + N++ + +P + C+ C++ K+ + SF
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMS--NPHLKKCDHCIVEKKSKVSFEF 58
Query: 522 GKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDN 560
KR +L+LVH + GP+ + GG Y ++FIDD+
Sbjct: 59 HSPKRP-TILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 462 FVKQGDEAWLWHFRYRHLNFGGLKTMQQKNMVIGLPQISPPSQTCEDCVMSKQHRNSFPQ 521
V+ ++ LWH R H+ + + + N++ + +P + C+ C++ K+ + SF
Sbjct: 1 MVESTEKVELWHKRLCHMIEKDMVKLCKSNVLSDMS--NPHLKKCDHCIVEKKSKVSFEF 58
Query: 522 GKSKRAKAVLELVHSDICGPITPCSNGGKRYVITFIDDN 560
KR +L+LVH + GP+ + GG Y ++FIDD+
Sbjct: 59 HSPKRP-TILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96